RNA id: TU62310


Basic Information

Item Value
RNA id TU62310
length 368
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G49806
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3390203 ~ 3392090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNGTTCTGTCCCACAGAGGAGGCTGTGCTGGATCGGAAGGAGGAATTCAAGACTGCACTGAAGCCCCTGCAGAAGAAGCTGAAAGCCTtcaataaagtgaaaacaaccTGTGATCAAACCGCAGAACACATTAAGACCCAGGCCCAGCAGACAGAGAGGCAGATAAAGGAGGAGTTTGAGAAACTTCACCAGTTTTTACGAGATGAAGAGGCAGCCAGGATAGCTGCactgagggaggaagaggagaagaagagTGGCATGATGAAGGAGAAGATTGAGAACTTGACAAGAAAGATATCATCTCTTTCAGACACAATCAGAGCCCTAGAGCAGGAGATGGGCGCTGAAGACATATCATTTCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62306 lncRNA downstream 10879 3373544 ~ 3379324 (-) True G49802
TU62058 lncRNA downstream 415050 2974949 ~ 2975153 (-) True G49614
TU62048 lncRNA downstream 479575 2909662 ~ 2910628 (-) True G49606
TU61973 lncRNA downstream 566227 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 687781 2636915 ~ 2702422 (-) True AMCG00008491
TU62317 lncRNA upstream 22091 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA upstream 33692 3425782 ~ 3437347 (-) True G49810
TU62322 lncRNA upstream 38724 3430814 ~ 3863106 (-) True AMCG00008554
TU62366 lncRNA upstream 299290 3691380 ~ 3693261 (-) True G49858
TU62368 lncRNA upstream 328879 3720969 ~ 3735477 (-) True G49860
AMCG00008528 mRNA downstream 19590 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008524 mRNA downstream 43430 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008522 mRNA downstream 154637 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008521 mRNA downstream 217232 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008518 mRNA downstream 259144 3128983 ~ 3131059 (-) True AMCG00008518
AMCG00008530 mRNA upstream 110672 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008531 mRNA upstream 129379 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008532 mRNA upstream 162449 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008536 mRNA upstream 208678 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008535 mRNA upstream 226559 3618649 ~ 3625092 (-) True AMCG00008535
TU62046 other downstream 481538 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1305197 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1509241 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1539921 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2449551 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 382493 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2356800 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2395660 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3555799 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3753535 7145625 ~ 7151472 (-) True G50476

Expression Profile