RNA id: TU62315


Basic Information

Item Value
RNA id TU62315
length 964
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G49810
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3425782 ~ 3437347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctctgtctctgtccctctgtctctgtccctccctctgtctctgtctctccacagCCCAAGAGCCACGTCCCGGCCGCCCCCGTGCCCCTGTCCTCGGAGGAGCTCCTCTCCCAGGCGGCGCAGAAAGTGCTGCTGCTGATGGAGGAGCTGAAGGGCAAAGAACTCGGTGCCATCATGAAAGAGATGAACGAGAAGAAGTTCCTCGCCAGCATCGCACATTTTATCCCGTACTACAACATAAGGATCAAACTCCCCGAGATACAGAGCGATGACGgagaagaggaagaagtAGAAGAAGGCAGTTAGTAGCCTGGAAGATATTTGTTTTGacctgtttgaaaatgtttttctttttacagttataaaaaatgtatgatttcacatttcaatttaaagttctttgacatgttttaaggtgaaataaagtaaatgaaacaCTTAGAACCAATGGAAATCGTTTTTCAAGGCACTGGAGAAGTGAATGTTATTTCTGGTGCCCACTGTTGACCGTCACAGCCTACTAAGGTAAAGGGGGCTGGATTTAGTTGAGTTTCTACCACCGCTTGATAAGGAATGTACGAATAATGAACTCTGACCATTCTTCTCTTGTTTTTTCAGTCTGATAGGCGTGGCTCTGCTTTTTAATGCCCAGATCTGCCCCAGGACTGAAAGATGGTCAGAGTTCAGTCGCGGTCTTTAATATGCTTTAGTTGATTTGTCTGTACCTTTGTGCACCATGGTTAACGAGCTCATTATTCATTTGTGGGTCAATGACTCAGTCCAAATATTTAACAGGGATTATTATATTCTCACAACAGAGCAGCAGTAGTAAGTGTTGAGATGAATGGACAGGGCTTTAATGGATGTATGACTTACTTTCTGAACTCCATGCTGCCGTCTTCCTCTGCAAAACAGGTTGAGATGGGTCGGTGCCATCCAGGTCATCTGTGTGGGGGGTGCTTT

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0007507 heart development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62310 lncRNA downstream 33692 3390203 ~ 3392090 (-) True G49806
TU62306 lncRNA downstream 46458 3373544 ~ 3379324 (-) True G49802
TU62058 lncRNA downstream 450629 2974949 ~ 2975153 (-) True G49614
TU62048 lncRNA downstream 515154 2909662 ~ 2910628 (-) True G49606
TU61973 lncRNA downstream 601806 2823241 ~ 2823976 (-) True G49547
TU62366 lncRNA upstream 254033 3691380 ~ 3693261 (-) True G49858
TU62368 lncRNA upstream 283622 3720969 ~ 3735477 (-) True G49860
TU62373 lncRNA upstream 285882 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA upstream 342428 3779775 ~ 3781104 (-) True G49871
TU62533 lncRNA upstream 724828 4162175 ~ 4163650 (-) True G49984
AMCG00008528 mRNA downstream 55169 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008524 mRNA downstream 79009 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008522 mRNA downstream 190216 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008521 mRNA downstream 252811 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008518 mRNA downstream 294723 3128983 ~ 3131059 (-) True AMCG00008518
AMCG00008530 mRNA upstream 65415 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008531 mRNA upstream 84122 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008532 mRNA upstream 117192 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008536 mRNA upstream 163421 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008535 mRNA upstream 181302 3618649 ~ 3625092 (-) True AMCG00008535
TU62046 other downstream 517117 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1340776 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1544820 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1575500 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2485130 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 337236 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2311543 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2350403 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3510542 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3708278 7145625 ~ 7151472 (-) True G50476

Expression Profile