RNA id: TU62368


Basic Information

Item Value
RNA id TU62368
length 2114
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G49860
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3720969 ~ 3735477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCGGTGCTGCTGCTGGGAGGGGGgttgcagaaacaaaatgacGAAACGCAGGGGAGAGGGGCTGAAGAGCAAACCATACGGCCCCTGCGTGTCGTGATCAGGCACGAACCCCTGCGTGTGATTGCAGCGGCATACGTGTCCTATGCGTTTGCGCTCATTTCTTGCGGAGGCGTAACATAgctctatttctctctttcagCAAGACAGGAAAACGACAGTACTGTTGCGGAGCTGAAAGCAAGACAGGAAAGAAAGGAGCACATTGTTGACGATCGCTTTCTGTCGGGCGGCTGCAGCGCGTATCCCTGTTCAGTGGAACTCAACAGCAACGGAAGCGTGTAAATACCTGGCAAGAGGCGCATCAGGCGGTTCCTCTGAAGCAGCTGACAGGTGATTCGCCAGGCCTGCTCTGACTACGGTGACCCCATAGGGTCAGGCAGGCTGTGGGGTCAGGCTGGGAGGAGTGCACTGTGGACCCTGGCTCTCTCTGGCTGTGGCATCGATCACCGGCCACCCGTCGCAACACTGACGCTCAGAAACCATTTACTGTCACATGCCCCCTCCTCGCAAACGGGCACCTGAGATTCACACCCACCCCAGCCACACAGTCGGCCAGGATGTCACAGCCAGTGTTTTGCACCACTGATAAGTCTTCGGCCACAGGGGGGACTGCTGTGCAAAGGGTGACAGGAGCAGGAAGCTGTGAAGCAGTCCTCGGTTTGAGTCTGCGGTGTCTGAATTGTGTTTTGGCTATCCTGACAGACCTTCCTTCTCAGGAGATCCCTGCAGGAATGTTATCGAAGAGGAATCGAAAGCCAGTTGTGCTACTTTCTAAGGGACTTTTCTTCCCCCGGCCACCTCTCAAAGACTATACAGGTGCTTGGTGCCACCCAATTACGTTTACCCTGGTAAATGACCGATCGTGCGTGAGGTTCCCACTTATaacaggctttttttttgtggtttgaCCACAGTTTCACAGCAATTTACTATGAGTGCAACCTGCCGGCACTACactttactacactggaccCTGGGAATACCACTATACACCACGAGCAATATGTCTAAGGCATGGTTACTATGGTAGACTGCGGTAACCTTGTGGCAGTGTAGTAAAGGACTGGGAAGGAGTGTTAAAACCTTGGTAAaccatttttttaatggtaaatTTACCAGGGTGCTGCCCAAACCTCAGCTATGAGCTTTCGGGCATCATGCAGGCCAAATATATGACCCAGTCCCTTGCAATCTGTTCCTACAGACAGGGTgccatttagaaatgtattgtgttttttgtgcttGAGGGGATCTCCTTAGAAATGCCAGAAGATCCCTCAGGACCCGGTGTAAGTAAGGAacactcaaaaaaataaaaaaaaataaagacgcTGTCGGGTTCTCCTCTCATCGGCGCCGATCGTCCCTGGCTGAGGTGCCTGCTCTTCAAACCGCTGCCGTGCTTCAGTGTAACTGAAAACAAGGCCCCTGAACCCATCAGCACATAACCACGCCCTCCTCTGGTGTCACCATACTCAAAGCCCAGCTGGCCGGGGCTGAGCTGTGGAGCCCCAGTCTCTGTGTGCTCCCCACCCCGAGCGAGAGACGATGACTTCACAGTGGCGGTGCGGAGCGTACGGTACCTGTGGCCCCCTTTGACAGCTACCACTGGAAGAGGTTTTTATGTGGCCGTTCGGCAGGCGAAGGGGAGCGTTTGAAATTGCTAATTAGAAAAGACCTCCggagaggaagggagaaagGGATTAACCTGCACCGCAGAGGGAAGAGAAACACGGGAAGCTTATTAAACCCGAAGTAATGGACTTTTCAGATTCTTTTTGTATTGGAGAGACGAGAGAAAGTCTGGGCTGGAgctttgacacacacacacacacacacacacacacacacacactcacacccacacacagagcCTATCTATCTGGACCCTGCTTAAGCAGAGAAAAAACTCTGGGAGGCTGAAAAGCCGGCATTACAATATACTAACGGCTGTGTGGCGAATTGATTTTTCTAGGCTTTCAAGGTTAGTGAGGAAATGCTATCAAAGGCTACATAAATGAATTATATATCCTCCCACTGTGAAAGGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62366 lncRNA downstream 27708 3691380 ~ 3693261 (-) True G49858
TU62317 lncRNA downstream 277060 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA downstream 283622 3425782 ~ 3437347 (-) True G49810
TU62310 lncRNA downstream 328879 3390203 ~ 3392090 (-) True G49806
TU62306 lncRNA downstream 341645 3373544 ~ 3379324 (-) True G49802
TU62382 lncRNA upstream 44298 3779775 ~ 3781104 (-) True G49871
TU62533 lncRNA upstream 426698 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 583306 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 1084763 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 1091577 4827054 ~ 4829621 (-) False G50126
AMCG00008535 mRNA downstream 95877 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008536 mRNA downstream 109705 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008532 mRNA downstream 163127 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008531 mRNA downstream 192494 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008530 mRNA downstream 216555 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008547 mRNA upstream 34207 3769684 ~ 3777037 (-) False AMCG00008547
AMCG00008553 mRNA upstream 84538 3820015 ~ 3822415 (-) True AMCG00008553
AMCG00008554 mRNA upstream 125990 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008558 mRNA upstream 155441 3890918 ~ 3912084 (-) True AMCG00008558
AMCG00008557 mRNA upstream 206691 3942168 ~ 3946340 (-) True AMCG00008557
TU62046 other downstream 812304 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1635963 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1840007 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1870687 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2780317 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 39106 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2013413 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2052273 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3212412 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3410148 7145625 ~ 7151472 (-) True G50476

Expression Profile