RNA id: TU62382


Basic Information

Item Value
RNA id TU62382
length 1308
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G49871
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3779775 ~ 3781104 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCAATATTTATTAACTTCTTTTAAGGTTTATTCAGTCATGATTTATAATTAGAATGTCATGAAGCAAGCTGAAACTGTAGATTTCAACAAActcatttaattgcattttttattacatacatCTCTCGTGACATTTTTTGTAACGAGTCTTTGTGCTTGTCAAATGCACTTTGCGCCCTCCAGCGGAACTAATCTGTAAATGCGCCTTGAGACACATTCAGTTCTACCTAAATTAAAGCAAAGAGAATgtataattcaaaatgtttattgttaaaaaaaacaatcacacttCTTAATACAATATGGCTCAAGTCTAGCAAACATGTTGatcaacattttccattttattaccagtcaaattaataaaataattcacagcTACTTAATTTTGATTGTCTGTGGGTGATatcatttctatatatatatatatatagaaaagacctagaagacaatcACATAAAAGATTGGAAGATTCAATcttaaactttgcaggtgtgacatggaaaagataatctgtagattgaagcaaggggaaacatcttggggagtcagagagaaagggagagacagaTACATACTTTGTTTTATGATCAAGTATGATGTcaaacaatgtaacaatataCCGATGTCtggtaaatacatttaaccctttgcagccagCCCATATTAATTTCTACATATCAGAAAAAGCAGTTTTGGaccacacaaacataaataatgagTATTGATctctgtaatacatttttgattagCTAAAAACATTAGGAAAAGGAATGTCTAAACTGATTGTCCTGTGACTGTTCTGTTTATGTGTCACTATCCAACTTTAGTGTAAAATAGCACAGAGGGGAATAGCAAATGTAGCTGTAAAACAATAATCTGGACCAGATTCACATTTCCAGATCGGTGGCGGCAGTGGCCAGGGAGACGCCTACAAGAAACAGACGAGGCTCCTATTGCTACAGCAGGCCGATCCGATTCCGGCTGCGGAGGCTCCCCGGGGGGGTCAGATGGTGCGGAGGTTGAGGGCGGCATAGCACAGGTTGACGCCAGTGCAGAGCAGGCCCAGCAGGTTGCAGAGGGAGGACAGGCCGTGGTAGCGGAAGAAAGAGCTCCGCAGACCCTTGTACTTGGGGTCCTGCTCGCGCAGCTTGGTGTAGCCCTCCTTGTTGGAGCGGAAGCCCACCTCGCCTCCCAGCCCGTGCTCCCGCTCCACCTCGTGCATCTGATGCATCAACTCAGTGACGGCCGGGCCGAACCACTGGGCATTCAGACCCGCCAGTATCAACGCGCCGAAGAACAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62368 lncRNA downstream 44298 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 86514 3691380 ~ 3693261 (-) True G49858
TU62317 lncRNA downstream 335866 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA downstream 342428 3425782 ~ 3437347 (-) True G49810
TU62310 lncRNA downstream 387685 3390203 ~ 3392090 (-) True G49806
TU62533 lncRNA upstream 381071 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 537679 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 1039136 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 1045950 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1827249 5608353 ~ 5610329 (-) False AMCG00008602
AMCG00008547 mRNA downstream 2738 3769684 ~ 3777037 (-) False AMCG00008547
AMCG00008535 mRNA downstream 154683 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008536 mRNA downstream 168511 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008532 mRNA downstream 221933 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008531 mRNA downstream 251300 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008553 mRNA upstream 38911 3820015 ~ 3822415 (-) True AMCG00008553
AMCG00008554 mRNA upstream 80363 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008558 mRNA upstream 109814 3890918 ~ 3912084 (-) True AMCG00008558
AMCG00008557 mRNA upstream 161064 3942168 ~ 3946340 (-) True AMCG00008557
AMCG00008563 mRNA upstream 188242 3969346 ~ 3980969 (-) True AMCG00008563
TU62371 other downstream 2421 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 871110 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1694769 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1898813 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1929493 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1967786 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2006646 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3166785 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3364521 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 4120231 7901335 ~ 7902606 (-) True G50602

Expression Profile