RNA id: TU62428


Basic Information

Item Value
RNA id TU62428
length 859
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G49914
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3963128 ~ 3964014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcattcaatagGTACTctttttattagcagacacctttggccgctgtgtgtgtgtgtgtgtgtgtgtgtgtccgtctctctctctctctctctctctctgcatgatTTTGAAACACATATTCTGCAGATACAAAATTGGGTCCAGAGAGCAAGACAGTCATGTCCGGGGGCTTTCTATACAGTCCTGGTAGAGGAGGAAAATATAAGAATGACAGATGATGGCGAGTGTACAGGCCCACATAGGAAGCAATGAGTTGGAGTCCCAGTTTTATCGTCTTACGAAAAGAGCCAATGGAGACAGTTTATGAGCAGATAAACAGAGTCATAGATCGTTCCCTTTTGGATTGGTTAATAGTATTTGATAACCAGAAAAGTCGTTTGGAAACTTCACAGCGGTTAGATTTACAGGCGTGGGGGTTACAAATCTGAATTTAACAATGGAAAACAGTGCTGTGGAATAATGAACATGATCtgtactaaaacaaacaaacccttcTTACTGTggttcaaataaatacactttatgGCTCCCATTTGAatcttacacattttttttttttttttttCTTTCTTTCCCTGCTCTGGACGGAGAACCTACAAGTCGCAGATTAGCTATCTAGCGTGTGTATCAGAGAGATCCATTAGTAAAGCCTGCTGGCAGGGGAGGGCTGGGAGTTGTATAGAAGGGGTCCTGAGGAGACAGCCCTGGGCGCAGTGCGGCCGAGGGTCATCCATGTCGGTCCCCGAAGGAATCAGGAGTCCAGCCGACACACTGGGCTGTCGTAGACCATCTGTAGGTTGACCTTGTGTCCCACTAGCTCTCGGATGTTGTTGATGCCGTACTTGATCATAGTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62240 lncRNA upstream 77524 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA upstream 518001 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 519231 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 603599 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 920533 3027978 ~ 3042595 (+) True G49636
TU62458 lncRNA downstream 61087 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 70735 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 343812 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 498348 4462362 ~ 4468763 (+) True G50055
TU62630 lncRNA downstream 523985 4487999 ~ 4488238 (+) True G50061
AMCG00008555 mRNA upstream 2078 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008556 mRNA upstream 23215 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008552 mRNA upstream 101738 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008551 mRNA upstream 118508 3837133 ~ 3844620 (+) True AMCG00008551
AMCG00008550 mRNA upstream 128549 3823994 ~ 3834579 (+) True AMCG00008550
AMCG00008560 mRNA downstream 45184 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008559 mRNA downstream 58511 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008569 mRNA downstream 133782 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008579 mRNA downstream 546976 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008580 mRNA downstream 598128 4562142 ~ 4572874 (+) False AMCG00008580
TU62012 other upstream 1074232 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1193084 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1751614 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1819818 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1857555 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 192074 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 198044 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 597977 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1632009 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1774527 5738541 ~ 5742750 (+) True G50243

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU249295 True 899 lncRNA 0.41 2 NC_047607.1 13077999 ~ 13078945 (-)
tiger barb (Puntius tetrazona) TU249295 True 304 lncRNA 0.55 2 NC_056723.1 10638063 ~ 10640728 (+)