RNA id: TU62533


Basic Information

Item Value
RNA id TU62533
length 1476
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G49984
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4162175 ~ 4163650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTACTCTGGTTACAACCTGCCTTTACTATGCTTTCCTACTCTCTACCATGAATGAGACATGGTCTGCACTGATCATGGTGTATTCGTGGTATTCCCAGGGTCCAGTGGAGTAAAGCACAGTGCAGGCGTGTTGAACCCATTCGAAACCATATTCAAAGTGCAAAGATCCTATGATCTTACCAGGGTGTATAAGGCGTAAAGGgttagatatatacatacatggtGCAGTACATTAACATTGTAAAGGGGGGGTTGTACAGGCATGCTGCAGGCTCGTCTCCATTGGCATATTGTGCACCATCCTTAATAAGAACAGTAGCCATACCcataaaacaatatgttttgAACAACTTTCAGGGTTAAATGCAGTAACTTTTCCGTTAACTATTGTACTGACTTCAGTGGGTGGTAGCGCTCTGTGGAAAACCCTGAAACCCCAGAGGAAATCCCATGGGGGAAACTGAAGTGAAACGTCATACAGCCACATGTAACTCTTCACCACAAAGCCGGGCCTTAGTCGCATGGATTCATTTTAGAATACAAGGCTAGAACCTGCATGAGTAGCGCTGCCTGCTTTCCCCATTCAGTCTGTGCCTTGAAAGCTGTAATTGGCATCCTTAAATCCGTAACAGGAGATCTCATGACAAATCACTCCTTccttaattactttaaattaaaatgacagtgtgaCCTGTAATCAGGTGATCAGGAGTAATTAAGAAGTCAGTCTGTGTAATTATTGAAGTAAAAAGATAGTTGTCAAAAGAAAGGGACAATattgttagtttttatttaattttttaactaACTTCACTAATCTGACTCAAGGGCCTTCAGCTCATCACctggctgaattaaaaaataataataattaaaaagtcattttGACAGAAATCCACAATCCATAAATACATCATTTGTCATGTTCGCCCTGATTTAATTGCGAAAAAGTACAGATGAGCAACTATTAATTACAGCTTTAGAGCCAAGTACTGACagccaatgaaaatgacaaacgCAGGCAGCACTCTGTCAATTCCAAACCGGTACGGTGGATTCACTATTCAAGACAAAAGGGGAATCTGAAATCTGCTGAATTGAGGTTTGGGCATGGATTGGCATTGGAATGTTGCATATTTCTACTCAATGTTTCCATATCTCTAACCCCTTCTCACGATATTAATCCCAGCCCCTCCTTGATCTTCTCATGCCCCTACAAGGCATTCTTCCACAACGGCATCACTTGCAAAGCAACCTCAGGCAGCCTTTGACTTCCCCATAAAGTACCTTTCTGAGATTCTATAACAGTTTATAGACTGGTTTGTAAGTCAATGTGACTGTGCTTATTGCTGGCATGTATCTTAACCAGTGTTTCTGTATATGTGAACAAAGACCTGTGTATAAGTActttatcaaatgtatttattatctgtTTTCTTATCCCAATTGTCTGGGAGAGACCTGAAGTTCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62322 lncRNA downstream 299069 3430814 ~ 3863106 (-) True AMCG00008554
TU62373 lncRNA downstream 352913 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 381071 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 426698 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 468914 3691380 ~ 3693261 (-) True G49858
TU62578 lncRNA upstream 155133 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 656590 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 663404 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1444703 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 1496697 5660347 ~ 5786328 (-) False AMCG00008609
AMCG00008564 mRNA downstream 2579 4158622 ~ 4159596 (-) True AMCG00008564
AMCG00008565 mRNA downstream 25057 4136132 ~ 4137118 (-) True AMCG00008565
AMCG00008568 mRNA downstream 47531 4108019 ~ 4114644 (-) True AMCG00008568
AMCG00008567 mRNA downstream 54162 4104743 ~ 4108013 (-) True AMCG00008567
AMCG00008566 mRNA downstream 70406 4069088 ~ 4091769 (-) True AMCG00008566
AMCG00008571 mRNA upstream 1398 4165048 ~ 4174152 (-) True AMCG00008571
AMCG00008570 mRNA upstream 74934 4238584 ~ 4250756 (-) True AMCG00008570
AMCG00008573 mRNA upstream 115503 4279153 ~ 4280552 (-) True AMCG00008573
AMCG00008576 mRNA upstream 119069 4282719 ~ 4292278 (-) True AMCG00008576
AMCG00008575 mRNA upstream 147344 4310994 ~ 4318313 (-) True AMCG00008575
TU62371 other downstream 384821 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1253510 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2077169 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2281213 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2311893 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1585240 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1624100 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2784239 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2981975 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3737685 7901335 ~ 7902606 (-) True G50602

Expression Profile