RNA id: TU62640


Basic Information

Item Value
RNA id TU62640
length 3511
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G50066
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4515496 ~ 4527552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTATTCTCTGCACAGTATGAAGCCtttataaaacaagaaacaaaattgaGACCGATACACTTGGAACTTTTAAATTAATCCACACAAACATAGATCCCTTTCAGTGCCTTGACCCGAGTCTTGAATTTGTTCAGTAGGTTTTGCCAGCACACCCGGAACAGTTttctacaacaacaacatatctGTCAATTTTTGTCCATTATCTGTAACAGAACCAAATTTAGTTGAATCACACTGCATTTTCATGTGCGGTCAATAAAGAAATCagcatacattaattaattgatagatttattgttcagtgttttagtctattttttatacatttcataaatatcacatctgttatacatttgaataatcCTATTCTCCTGGGGCATCTTATCTCAGTTCCAAAGAAAccgaaaacaaaaacaaaacatccccaATTAGAATTTTTACATCTGTCAGTGCAAAATACCTAAAGCAAAGCtaatgaaaatcaaaaatatatacatatatacttagAGTATTATTGAATATTAATATCTTTTGTATTAGTAGTTTCCTTTAGAGTTGAAGAAccatttaaaaacttaaatctaaaacattttgtaaaataaataagttggtTCGAATCATATTGGCAAAAGTACCTTGTACAGTGATTGCTTACATAAAAGAAACTCGACACATACATTTCGGTCCACCCCTGTGAACTGTGAGAAgaatatttttagattttcaaTAGGCCTGGGTTTACCAAGTACTACATTAGCATTGTGGGAAATAATATTGTCCCGTAagacatctaaaataaaatggaagtgTGTAAACAAAAGGTCACATATAGTTGCAGACATTTAGTGATCAagtaaggaaagaaaataaataccagttagaaaattatatacaataaataaataaaaatgtgtgaaactGTTGCcttacacaaatgtttttttttttttttttttttagttagtcccccccaccccccaaaggACGATGCCGACACTTTTTCAGGGTGGTTAGCATTGATAGTCTCTGTGCATCAGAACACTTTCTTGCCACTCATACGTTCCACCCTCACTTCTTAAACCTCTGCCCACAATAAGAGTGGGGGACGGCATTATGACACATTTGTGTGCAGGATTCTAGACCTGAGggatatacaaaatgtaatgccTGGATAGATTTTCCCCTTCGAACGTCAACATGACGTGGCGTTTAGGACACACTTTCAAAAATGTGATTTAGGGAACTCATAACCATTCTGGGCACAGGTCCCATTGCAGCCAATACTATCAAGAGTAAAAACTTGAGCCTGAATAAGGACTTCAAAAAGACTTGCCTGCACTCTCTCATGATTTCACATGAATGGGGCCCCATTCCTTTACAGAGTGTTCTGCTGCAGTCTTGCCTTTGACCGCTCACATGACTAATGGATTATTGCAATCAGAAAAATACCTCCGAGGTGACTGCCTGGGAATTAGAGGACATTGAAGATTGAAGATTCTAGAGGAAACCACTTGGTGCCGGGCTAATTTCCTTCCCCTCGGTACATTTCCTAGCTGTCAGTGCATAGGAGTAAATTTCACAGTCTAATTTTCCCGCTATTGGCAGATGATGCCCAGGAAAATCTGTAGCTGCAGCAGAGCACAGGAAAGCACAGGCCACAGGTGAGAAATGAAGGATGAAAATGGAGCACAACCATTTAGCAATTCTTAACCTCAGCACCACCATAACCCAACCTGTCGTCActgaaagaggaagaaaaaaacaacaactttgcaATGCATGCTTTCCGACATACTAGTTCTCATTTAAACATTGGAGATTGAAAACTGATACACTTccctgatttacattttttgatcCATTCCAATGAAGGGTTTTGTTAAGCAGTACATATGTTTACTGTGTGGATGGGGAAGATTTTATCATTGGAGGATTTCAGGGCACTTCATACTTCTTCTCTCAGTCCTAGCGGCTGTGTAAACCTGAAAAGGCCCACTGAAAAACAACGTTGTCTACAGCAACTGGTTTGCTCCTATGCACGGAGGTTTGAAATTGCAAGGATGTGAGATGAACACGGCTCTCTGGAATGCTGACAAACAGaggtggggggaggtggggggtgggaggtcAAAAGTGCTAGAGATAAGGGTTGGgttggttttacattttcaatgatCTTTTTCTGACCacattccaaattccaattctAATTATTTTTGACAAGGGAATTGTTcatcaatatcaataaatatatatagaaggTAGAAGGAATCCAGACCTGGACTAAAATTGTGCACTATCACTATAAAGGTCCAAATAAAAGAGGATGGTAGGTAAAGTGAAGGACAAAGTAAGGGCAGAATATTCCGTTTGCAGTCCTGTGTTTCGGTATTGAAACAAGATCCTGATACTTGGCTAAAGGGCTGGGGGTTATCATTAGGCAACTTTCAGGCCCAAGTCTGGAGTGTGTTACCATCTGCAGTGGGGCACTCTGGGCAGGAGTTTTAACTTTTAAGATAGGTAAAGATTAACCCAGTGGAAGAGCCTGGAAGGGGTTCTCCTTTAAGTGAACTGGAGTCCTTGGAGAGTGTGAGAGTTTCCTTAGAGTGGTCAATTGTGGATGGATAGGATTTTTCCTACTAGGATCAATGCAAAATCCTAATCAAGCAGGGACCTTGTGGGATCTACCCCTCCTCATAATATTGCCATCCTATTAAGTTAAACTCCAAAACAACCAAACCCAAGAGGTCTTGTCTGTATCCAGAGTTTCCATGTTCTAGGTGAAAGCTGAAAAGAGGGGTGAAAAAGAATATGGCGAAGTTGATGATACTTCagacataaatataattaatactaAGGCCCGAGTGCAACAATTGGGCCCTTGGATGATTTCCAATCTCTGTGGGACAACAAAGCAGCAACAATTAGCACTTGAAGATACAAAGCATCCAAGAGCATGGAAAAACAGGTGATGTCAGCCGGTAACCACAGGTGCACTGAACAGTGAAACTGGCTTTTCCTTCTTTCACCAGCTACTTTGTGGACCCTGGGGCCAGATGGATCTTTCAGGAAGACGTCTTTGGGAGCTCATGGAATCAGTGGGGTTATCTGAACATCCAAACAAGCCATTAGGTTTCCAGTTCCCCTCCAGGATCTGAAATGGAGTTCAGGTTTGGCGGTTGTGGTTATGGAAagcccactccttctcatccctggcccctaagtggtggaacgaccttcccaccgaagtcaaaacagcagagtccttgacctcattccggcgcttactcaagacgcatcttttctgacaatacttgtaatattagtcctctatccctgctagatagcacttcacaatttttattatgcttctcgcgttcttgatagttttcctccttgctccctttcctgtagcccttgtctgtgaccctacatcttgacagaacttagctttcaccgtccaggatgtaggaagtcacttattgtacttgtgtaaattgtaaattgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62630 lncRNA upstream 27258 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 46733 4462362 ~ 4468763 (+) True G50055
TU62565 lncRNA upstream 206660 4307826 ~ 4308836 (+) True G50011
TU62464 lncRNA upstream 480444 4034749 ~ 4035052 (+) True G49944
TU62458 lncRNA upstream 489250 4025101 ~ 4026246 (+) True G49938
TU62666 lncRNA downstream 55350 4582902 ~ 4583205 (+) True G50086
TU62727 lncRNA downstream 389451 4917003 ~ 4917257 (+) True G50142
TU62739 lncRNA downstream 442457 4970009 ~ 4970248 (+) True G50153
TU62769 lncRNA downstream 621916 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 622343 5149895 ~ 5155484 (+) True G50181
AMCG00008579 mRNA upstream 3436 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008569 mRNA upstream 417340 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008559 mRNA upstream 492003 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008560 mRNA upstream 505351 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008555 mRNA upstream 554446 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008580 mRNA downstream 34590 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008588 mRNA downstream 272902 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008587 mRNA downstream 296575 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008590 mRNA downstream 371893 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008593 mRNA downstream 515202 5042754 ~ 5055756 (+) True AMCG00008593
TU62530 other upstream 350013 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 355434 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 1626600 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1745452 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 2303982 2209483 ~ 2211514 (+) True G49340
TU62655 other downstream 34439 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1068471 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1210989 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 2430059 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 3406277 7933829 ~ 7939771 (+) True G50583

Expression Profile