RNA id: TU62707


Basic Information

Item Value
RNA id TU62707
length 730
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G50126
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4820240 ~ 4829621 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACCCCCCTCTTCCATAACCACCAGCACCATTTCCTGCAAACTTCAAATGTTGCATCCATGCTGGAAGACCTCAAACTAGCTGCCACGTCATTCGATGTAAGGAGGGGGAGCGGACGGAGAAGGCTGCCATCCACTCTTTCAGTGGAAACTTTTCAGCTGAGAGCAGAAGACAGATGGCACTCTTTGTTCTACTGAACCCGTATACCTACAACTACAGCCAAGAAAGTGTTGCTGACAGTCACACAGTCTGGCTTTGTCGTCTCCAGGAGGAATAACTGATGCCAGGCTGAATGGAGCGTGTGCCCCCCTGCATGCCCCTCCCATTCCCCTTCGCCTCCCCAGTGTTCAGACTACCTGTTCATTAATCTTCGGGTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCGGGGATAAACTGAGGAAGATGAGGATGCACAGGAACCATCCAACTGTATTTGCTTTAGATTGTAAATGTATGCACTTTTACTGGAAGTGAACTGTGCCTCTGTTTTCCCATACTTACACGTAAATGTAAAATTTGGGCAATACTGTAATTTGTCCTGGATAAAGGCCTCTcataaagagattaaaaaatacaacaaaataaattaatccaacTGTACCTAAATAAAACTGTGCCAGAGCTAAAATCgtttcaattgtttttattaacttgATTTATTAACAAGGAACATTCTAATGTAATGACTGGGAAAGGTGAAGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62578 lncRNA downstream 505166 4318783 ~ 4321888 (-) True G50020
TU62533 lncRNA downstream 663404 4162175 ~ 4163650 (-) True G49984
TU62373 lncRNA downstream 1017792 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 1045950 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 1091577 3720969 ~ 3735477 (-) True G49860
TU62815 lncRNA upstream 778732 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 830726 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA upstream 899429 5729050 ~ 5730043 (-) False AMCG00008609
TU62872 lncRNA upstream 1111574 5941195 ~ 5941527 (-) True G50268
TU62950 lncRNA upstream 1513055 6342676 ~ 6342964 (-) True G50337
AMCG00008582 mRNA downstream 59793 4758673 ~ 4767261 (-) True AMCG00008582
AMCG00008583 mRNA downstream 129273 4680530 ~ 4697781 (-) True AMCG00008583
AMCG00008585 mRNA downstream 153439 4662321 ~ 4673615 (-) True AMCG00008585
AMCG00008584 mRNA downstream 183438 4621852 ~ 4643616 (-) True AMCG00008584
AMCG00008586 mRNA downstream 205310 4616815 ~ 4621744 (-) True AMCG00008586
AMCG00008589 mRNA upstream 27286 4856907 ~ 4864403 (-) True AMCG00008589
AMCG00008592 mRNA upstream 60447 4890068 ~ 4894519 (-) True AMCG00008592
AMCG00008591 mRNA upstream 115788 4945409 ~ 4953366 (-) True AMCG00008591
AMCG00008595 mRNA upstream 280095 5109716 ~ 5110501 (-) True AMCG00008595
AMCG00008599 mRNA upstream 327674 5157295 ~ 5165357 (-) True AMCG00008599
TU62371 other downstream 1049700 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1918389 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2742048 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2946092 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2976772 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 919269 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 958129 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2118268 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2316004 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3071714 7901335 ~ 7902606 (-) True G50602

Expression Profile