RNA id: TU62727


Basic Information

Item Value
RNA id TU62727
length 255
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G50142
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4917003 ~ 4917257 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGCCccgggttcctcctggtgcaggacaatgtccggcctcatgtggccagagtgtgtagacagttcctggatgacgaaggcattgatgccattgactggccctcacgttccccagacctgaatccaattgagaacctttgggacgttatgtatcggtgcatccgacgccgccaagtagagccacagactgtccaggagctcactgatgccctgattcaggtctgggaggaaatcccccaggacaccatctgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62666 lncRNA upstream 333798 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 389451 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 428765 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 448240 4462362 ~ 4468763 (+) True G50055
TU62565 lncRNA upstream 608167 4307826 ~ 4308836 (+) True G50011
TU62739 lncRNA downstream 52752 4970009 ~ 4970248 (+) True G50153
TU62769 lncRNA downstream 232211 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 232638 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 505566 5422823 ~ 5423045 (+) True G50185
TU62788 lncRNA downstream 642764 5560021 ~ 5560609 (+) True G50196
AMCG00008590 mRNA upstream 12930 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 81347 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 104096 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008580 mRNA upstream 344129 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008579 mRNA upstream 404943 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008593 mRNA downstream 125497 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008594 mRNA downstream 177107 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008601 mRNA downstream 697662 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 827547 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 849507 5766764 ~ 5776682 (+) True AMCG00008605
TU62655 other upstream 344269 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 751520 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 756941 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2028107 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2146959 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 678766 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 821284 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 2040354 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 3016572 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 3016572 7933829 ~ 7939771 (+) False G50583

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2354120 True 3842 lncRNA 0.45 2 NC_048591.1 17259154 ~ 17263052 (-)