RNA id: TU62739


Basic Information

Item Value
RNA id TU62739
length 240
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G50153
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4970009 ~ 4970248 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGATCATATATGATGAAGTGCTCCGTGCCAAAGAGATGAGCAGACACCGGCGTTTCGTTCAAAATAACCCAAACCAAACCAGAAAGACACAGATAAACCAGTGGACTTGGGTCGAAAATGCTCTAAATTATTCAAACGCTCTTGGTGTTAATATGtgcatcattaataataattaacaaaaaagttTATTAGAACTATGTATAGCATCATTGCGATAAGAAGGCACGTCGTAACAGGAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62727 lncRNA upstream 52752 4917003 ~ 4917257 (+) True G50142
TU62666 lncRNA upstream 386804 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 442457 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 481771 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 501246 4462362 ~ 4468763 (+) True G50055
TU62769 lncRNA downstream 179220 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 179647 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 452575 5422823 ~ 5423045 (+) True G50185
TU62788 lncRNA downstream 589773 5560021 ~ 5560609 (+) True G50196
TU62800 lncRNA downstream 608974 5579222 ~ 5580022 (+) True G50206
AMCG00008590 mRNA upstream 65936 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 134353 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 157102 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008580 mRNA upstream 397135 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008579 mRNA upstream 457949 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008593 mRNA downstream 72506 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008594 mRNA downstream 124116 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008601 mRNA downstream 644671 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 774556 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 796516 5766764 ~ 5776682 (+) True AMCG00008605
TU62655 other upstream 397275 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 804526 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 809947 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2081113 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2199965 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 625775 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 768293 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1987363 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2963581 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2963581 7933829 ~ 7939771 (+) False G50583

Expression Profile