RNA id: TU62769


Basic Information

Item Value
RNA id TU62769
length 390
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G50180
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5149468 ~ 5149857 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcTGATATAGAGGTGATACACACCTGCGATCACGCCAACGCTCGGTAAAACAACCCCTTTGGCCCAAAGAGCtggcaaatcaataaaaaaggtcttaaataaataaataaataatagatcaataaatacataaataaatcaataacttaAATCGATTGTAGAAAATGGCACGTGCGGTGCCCAACCCCCTGTGGCACAAAATCACTCGCAAAACAGATGCCCAGAATCCCTGCCAACTGACGCCCTTTTCTCCCAAGTCTGCCCCTGCATCTGGCCCTACCCTCTTCCTGCAggacaatgctttttttttcccttttctgtgcCACCTTCACTGCTATATTAACATTGTCACCATTGTCACTGTTCTCTTCCTGCCCCACTTATGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62739 lncRNA upstream 179220 4970009 ~ 4970248 (+) True G50153
TU62727 lncRNA upstream 232211 4917003 ~ 4917257 (+) True G50142
TU62666 lncRNA upstream 566263 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 621916 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 661230 4487999 ~ 4488238 (+) True G50061
TU62770 lncRNA downstream 38 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 272966 5422823 ~ 5423045 (+) True G50185
TU62788 lncRNA downstream 410164 5560021 ~ 5560609 (+) True G50196
TU62800 lncRNA downstream 429365 5579222 ~ 5580022 (+) True G50206
TU62807 lncRNA downstream 436943 5586800 ~ 5591201 (+) True G50212
AMCG00008594 mRNA upstream 40664 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008593 mRNA upstream 93712 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 245395 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 313812 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 336561 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008601 mRNA downstream 465062 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 594947 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 616907 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 694488 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 732136 5881993 ~ 5883048 (+) True AMCG00008604
TU62655 other upstream 576734 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 983985 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 989406 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2260572 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2379424 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 446166 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 588684 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1807754 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2783972 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2783972 7933829 ~ 7939771 (+) False G50583

Expression Profile