RNA id: TU62770


Basic Information

Item Value
RNA id TU62770
length 5590
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G50181
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5149895 ~ 5155484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctgcccagCAGAAACAGTGTACACCAGCGGCTTTCAAACTGGGGGGCTGGGAATCCCTTTGGGTGTCtgcagaaagaaataaagaaaaaaagtctggTTGACAACACGCCACCAGAGAAAAATAAGCGTCTCTAGAACATTCTCCATCCCTGCAACCATGGCAGCTAGTGTAAAAACTCCCTGAATAGGACCCTGGAGATTGAATGTACAGACAAGTGGGCCTACTCTTTGAGTTTGCTCCCATTTAACTGAAACGCCAGTGTTCCACTGTATGCACTGAAGGCATGGAACTGGTCGAACTGTATTAGTGTGTTGGATTGTTCTGTTTAGTGGTGGatctttgcctgttttttttttttttttttttttttataagggCACCTCCGCCAAAAACATTTGAGAACCGCTGGTTTAGACTGAAAGACAACtatgtacagacagacagacagcaataTCTGACACAGGGTCACTTCAACATTCCAGGCACAGCACCCATAgatatatctttatatttatatatgtatatagcaTTTTGACAAATAACCAGaagccaaaaaaaagaaaaagttatttCATTAGAAATCTATAGCAAGTCAATTGAAATGgaacttctttttttaaaaagaaacaaaaaacatccccAACCCAACCACCCACCCCCCAAATCCCTTATATGTCATTATTTGAATTCAGATTTTGTTCCTGTTCTGACAGAGCAGTTGCAGTTTGGTCATTGGCCCTTTGACAGAGAATGCTCATTCCAGATGTTGTCTCCAAATAAACACgttaataagtaaattaatacacaaacatacacagacTTAAATACACAAGTTTCCAGTCTCCCAAGTAAAATTCAAAGGATGAGCAGTGCCACcttgctgtattttgtttgtgtgttggtttgtaTGGCGTTTGAGGTTTGCCCTGCCTTCCTAACTAGCTGCTGGTTGAGCCGCGAGACAGGAACCTCGGAGAGGAAGGATAACAATACCGCACTCCAGCGATTTGGAGCCTAGAGGCCACACTGAAACTCTTCTCCAACTCGTCTCCCCGCTTTGATGagtattttctcatttgtttgctttcctttttccttGGTGGGTTCAAAAGGTATTAATAACGCAAGAGGACAGAGTAGCACATTAAACACAACATTCGGATATGTCACATTTTATCAACCGATATAGCAGGGTCATGGGGGTGACATAGATTACAtctttttaatggttttgtaaCAATTGAATTGGCCAGGGGGCTCTATCAGACTTGTCTCTATTGGTTTAACTTACAGACAATGCAGTTGCGGTCTTAATCTTTTTGGGTCCAATGAGGGCAAACTATAAAGTTAGTTATAGAATACAGAATatagaaaattaatattttttcagttctgtGGGTTAAAAACGAAAGGGAACACTTTTGTTActcttttttgtaattgttttttacttttcccCCTCTCACACATGGGGTCCTTATCGGCTTCTGTCTATCTAGCAAACTTCTTAAGTACCCGTAGCGGGAGGGACAAATGCACATCGCTTGAACATGCTTCAGACCCGTGTTTCTGGACTCTCCTGAGCGCTCCCCTGTGGAGTGGAAGTGAAGGGACTTACTGTTTTGTAAGATAATTACTTctctatgtttttttaatgatgacaacttttatttattgaattgctTGCAATCTGGTTCCCCCACTCCACTGCTTCTACCAGCTCCAGATTACGGGTTATTGAATGCCGTTGAAAGCaagcaccaccaccactaccactATAACAAAACTGTAACTGCAATGCTGGCTGCTGCTGTGTGGATCTCATGCAGAAGCACTCTGATTCTCCAGAGAGAGGCTGCCAATGACTGCTGCAAATCAGATactgggggggagggagagacagagagagagagagcgagagagagagaaataaatatggACTGCAGTCTGGGATGGGATGTGGGCTAGTGAAGTcttttagcagacaccttttACTGATGGCAAGGTAAGCaaagtttaattttcaaaagCTTCTCAACCCAGGATCAGGGCTGGTCTTTCCATCAGTCCCACAGGGGCATCAGGGCAGAGGTGGCttgtggtttgtgttccaaAGGAAGCTCCGAATTCCTAAATTACTTGACATATCTTCTCATTTTGGCTTATTTAGGATATTcctatacatatctatatacatatacacatatctatatatataactgtgtgtttgtgtgaaaaacaaacaagaagatTGCATAGCAGATGGAAAAGATAGACATCTGTGGATTGAGATGAGTGGAAGCCatttggggaggccttcatccagcagtggttCAGCAAATGCTGATGCTGATGatgtctatatatgtgtgtgtgtgtgttattattattattgttttattgtattaggTTTTACAGCTAATAGCTTAATATATGCTGTTTCCAGAGACTGCCTTTAACGATCAGTCACCTATCATTTTGCCTGCTCAGATAACTGGCTCAGTATTTCTGAATCTCTCTTTACCAAAGCACAAACATCTGGGAACACATTTGCCTCCACCCCATTAATTTTGAGCCAGTGAAGTCTATTTAAAGCTGATTCAGTACCGCGGTGCAGTGAGCAATAGCATCTAATGAACTGACCCAGAATCCGGGTCCCTTCAGCACTGCTTTAAACTTCAGTGCTgaggggatggggatggggatggggggggtcTATCCGAAGCAGCCTGGAAAGCAAGAAGTCAGGTAGGTATGGTGGGGTGATTAAAAGGAGAGTGGCAGGAAATTATGAAAGAGACGGGCCACTGTGGACAGCCTGATCAAGACTTGAATTACTTAAACATAGCATGGGGATCAAACAGACCGGAGCGCTCTTGGTACAGCCAAGCCCGCCAGTTAACAAGGACggatgttttaattaaaagtccCATTGCCTGCGAGAGCGATGGCAGTTCCAAAGCGCTGAGAGCCTGAACAGCTTGAATATGACACTCTGAGTTCCCTTAAGCTAAAATAAACCGCATTCTCGGGAGCAACGTTCTTTCAAGAGGCCTTAAACTTCAGTCGTACCGTTAGTCATTATTGAAAAGGACAAAGCATTGCACAGTAGATTGCAGTGggggggaaaatatattttcctgatGGAGATTATATTAGTTTTTCTGTAAAGCATTCTGTATTCACAACAGAAATGTGATAGTTACTGACTGAATAACTCAGGAGAGCTTGCTATTTAGGGATTTTCTTTCCCAGGGTGAGAGACTGTTTGCCAATTGCTGCTGAAGCCAGTGCATTGAAGTGGTTTGATTTAAGAACTTGACACAGAAGAGGGAAATTGTACTATAGTGATAATATAGTGCTAGTCAGTCTAACTGCAGCTAATTTAGAGAATGCTGAGAGTCTTTTCGGCAGGGCTTTAAAACGGTGCCACCCTGACGTGAGTCCTAAGTGCGCTCGAGAAATAAAGGCAGAACAGCCAGGATGGCGGTCCTTTTGCTTTTATAAGACCCTTCCCCCTGGCTGAGGGTGGAAACAACACTGATCCGAAGGTTTAATTAAAGGCAGAATCGCTTCAGTCAAGCGCCTCCTCTGATCCTTGCATTTGCTATCAGCACAGGAACAGCCGAGGGGGGAGAGGAAGTCCACAGTTAATACAACCCCATCCCCAAGTCAGTTCTATCCTCGCATCTCGTCAGCCGCACTGTGGGGTGGCGGACAAACGtctatataatatacacagaaACACTGCCCGACCTCCTTTATTGCACATACGCCCTGGCCAAGACCCACCTGAAAATCCCACCTCTTTCCTGTCACCATCAGGGTCAAAACAAACCTCACTTAAAAATGACAGCTGTTTAACGTGGCCAAGTCACAAGCTGAAGGGCCCACTTTCTATTTGAATCATCACCCGAATGTCGTCTGGAGAAAGGGTACTGGTcaaatagaagaagaagaatttagGAGGAATGCTGATCCTCTGTGTGACTATTGGTCCTGATGACCCTGTGTAGATTGGGCTAAAAACCCCTTCAGAGACAGACTTGGCATTTGTACCTTATAGAAGTGGTGTACACAGAcgtacacagacatacacacaataaatcaattaagatAAATAAAGCACTGCGTTATGGACTGAGGTGTGCATCCTTCATGAAGAGCAGAACCTCCCCAGCAATAATCGCCTCAGCCCTTTCTAATACCTGCCCCTGGATCAACAGCTGCAAAGCCGGACCCCGGTCAGACTCAGCCTCAGACCTGGTGAGGCGTGGATTAGCTATAGCGCCCCCTGGAGACTTTGAAGCCAACCAGCACCACAGCCCAGATTCGAACCTGCGAAGCTCTAGGCTGTAGGATTCGTAACACcagttttgtgattttatttgttgcCTGTGGCCGCTTTGACGGGACCACTTTGGCCCATACAGCGTTTCTGCCAGGGTCTTTCCTCAGAGAACCGACAATCAGCCTCACGAGAAATCCCCTCGTGTCAGCAAACATGGAACATGTTGAGAGAAATACATACAGTTCGAAAATGTATTGATAGCCGCTATCACAAGTAATTGAGGATAAGAGACTTTGTACGGACCCATAGAGAGCTTCCTTCATTTTGACCCTCCGTACAACTAggttaacaataaaataaacaaattaattaatgaattaaacacATAGACATACATAAAAGGCATTTCTCGGACCCCTACGTATCACGAGTTTTGGGAGAGCCCCCTGATCATCTCTGAACCTCCCTAGCACAGCCCAGTCCAGTCCGGTGCCTCCACACCAGAGTTGGCCAACCCTGGGCCCAGAGAGCCGCAGTGtcttgtgtgttattttgtgtgtttttttgcaaactGTAAACTACTTCATTGATTCAATTGTTGGGCTTAATGAGTCCAAATTACTTCAAGCGATTGATGATTTCCAGAGCCACGGCCACCTTTAACAGGAACGTGCTACGGCTCGGCCCTTTGGTAATTGACAGGAATATGGGTGATATCTTTTGTTGGCTCAACGTGCCTCTTTTTCCGTTTGTTAGGTTATCATCCTATAATTTCTCCAAACTCTGGCACAATGATTTCCCCTCTTCAAGACAGGGTTAGTGCGTGCACCTATGTTACAATGGGTGACAGCTTTTTGATAAGATTACCAGAATAGTTCCCTCTTATTAGGCAAATGACTTAAACGTAACAACTGCACTGTCACACAAGACTGATTCTGGTATAACAGGCAATCTGAGTGTGAGGGAGACAGGGTTAATGATCACAGGGAAAGCTGGCCGGGGTAAGGACCAGGTTCCTATGACTCCCCCAAAAGTGGAACGTAATTTGTAACTACGATTAAAATCGGTTGCGACTATAGTTATGGTTGGGCTGTTTCTCTGGGAAGAACACAGACTGGCACAGATCGTCTCCATTTTGGGATCTGTCTTTTTCATACTGGGAACAAAACCAGCCTGTCGCTCTGATATGGGTTTGAAAGTGGGCAGAGACCGAATACAAATGTTCAAGGACAAGAAGGGGCACTCCAGGTTtactccccacccccccaaacacCAACACCTAGACTaggcctcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62769 lncRNA upstream 38 5149468 ~ 5149857 (+) True G50180
TU62739 lncRNA upstream 179647 4970009 ~ 4970248 (+) True G50153
TU62727 lncRNA upstream 232638 4917003 ~ 4917257 (+) True G50142
TU62666 lncRNA upstream 566690 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 622343 4515496 ~ 4527552 (+) True G50066
TU62777 lncRNA downstream 267339 5422823 ~ 5423045 (+) True G50185
TU62788 lncRNA downstream 404537 5560021 ~ 5560609 (+) True G50196
TU62800 lncRNA downstream 423738 5579222 ~ 5580022 (+) True G50206
TU62807 lncRNA downstream 431316 5586800 ~ 5591201 (+) True G50212
TU62808 lncRNA downstream 436952 5592436 ~ 5592931 (+) True G50213
AMCG00008594 mRNA upstream 41091 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008593 mRNA upstream 94139 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 245822 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 314239 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 336988 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008601 mRNA downstream 459435 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 589320 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 611280 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 688861 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 726509 5881993 ~ 5883048 (+) True AMCG00008604
TU62655 other upstream 577161 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 984412 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 989833 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2260999 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2379851 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 440539 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 583057 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1802127 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2778345 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2778345 7933829 ~ 7939771 (+) False G50583

Expression Profile