RNA id: TU62807


Basic Information

Item Value
RNA id TU62807
length 4402
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G50212
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5586800 ~ 5591201 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCATTATTGCTATCTGCATGCAATACTTTGCACTTGTCTGTACTTGGTTTCATTCACAAGCTGCCTGCTCTGTCTTAAATGGTGTCTTACCGCATTTTGGTGTCCCTTGCAAAAGTGATATGTTTACCGGCCAATGTAAATCAACACCAGGGTTACAGTTCTCTTTACAGCTACATTACAATGGTCCTTTTGTGTTCTTCAGCTCATTATAACCATTCACTTCCTGTAACAAAAAGGGggtaaaaaaattaataaataaaaccaaatgatgcatttataataacaaatgtgctttattaattattattattactttttggGGGGGCTGATAACACTGTATGGCATATGATGCTACCAATTTACAAAAAGaatactattaaaaaacaaaaaaaccttaaGTGCTTATTATAGTTGTGCAATATCACGGAATACTGTTTATACAACTAAACAATACgattcaatacaatacaattaacaaatgaagttaaaatactgaaaattcAACATTGTTCACAGAAGACACCACCTCGACAACAGAGAGGGTGCTTTTAGATAATATGGCCATTGTATTCCTTTCCAACGTAAGAGTATTTGTCACAAGCCCCACAATAATCTTTGGTTTGACTCCCAAGGTTGCAGCTGCAATGTACTGGCTTATGTCCTCTGCAGTTTTCACCTACTATTGGACATAGATATTGGCCTTTCAATCCTAAAGAAAagtttgtattcttttttaattatttgaatatccTCACTGCCAGAAAAACACCAATGCACAAGGAGCAATCTTTTTGGTCTTTCTGGCAATGTATACAGATTTCAATTAAACTCAATCATAtttcatgattaaaaaacaaaaacaaaccaacaaaaaaaacagtaaccagttttacatgttttacacaCTGACAGAGCGACAGAACAATACCCTCTTTACAACGAACAGCCATTCAAAATGAGTTTTCCCAAACATAACCGCAATCCTTTCATATAAACATGGTGAGTCACAACAGTCCTGTGACCTGCTGTCTTGGGCCCCCTCTAGTGGTTGTTGAATAAAAACCACTTACCACTGTTTCCGATGCTTGTATGAATCACAGAATCAGCTACGGGAATGTGAACCCAACTGATGGGGCATACATTTCCAACACCATATTGGAATATGTAGTATTTCTACCAGTCTACATGTATAACACTGTCAAAGCTTGCGCTGCACAAAAGCAATCCttatctacttttttttttctgaccccACCCCGACTATGTGGCTGATGATTTTATCAAAAGCTACTAACATGGCTTCCCATATATGCAttaatatagttttttgttttttatttgagtcATCTGGGTAAAGTACCTCAGTCCGTCATTCAATAAGTTTCCCAGAAAACACCACCCCGTTGGCTGAACCATGCTACAGAAAACCACTGGTGGGGGGTAACTAATATCTAATAACATTACAGAGGAATAAGCCAGTTTTTAAACGGGAGAAAAAGCATCCACAACAATCCAATGACAAACCATGTAAATATAACAACATAAATAGTGACAATTAATCGTTTCCTAAATATGTACCGtgtacagaaataataatacaataagataaaaaaagaagcagcaaaaatacaatacaatacaaacccAATAAACAAGTGCAAAGGAATTTGGTCAGTTTGTGCAGGAATAACAGGGTATCAAGAACACAAAAAAGTTGCCAATAGAAAACCTCATTCTGTGCCCAACTGTATCATGGACTTCATTGTCGGATAGCGATTTTGGGTCATACAGTCTAGTGTTTGTTGCACACCTTTGACAATACAAATTCAAGTCTGTTTTGAGAACTGAATTGACCTTTGATATACATTCACAGGGGTCACTGAGGGTTTGAAGCACTAAAAGTGGCCCCCAACACTCAGGTGATCACCCCCAATTTGGGATATCTACTTTAGgtcttttttatttccctcctaACTTGATTCACAAGTTCGAGCAGAGGCCTGACAAACCAGTGAGCATCCTCACTGCCACCGGTTGGATTGTTGTTTTGCAACACTACAAAATAAAGCTGAACGTATCTATTAATCTCGTGCACATcttctaaaaaatattttggacaGTTTATGGGTCCCTATCAAATTCACTTCATCAGTCTTGATGGCTATCAGCACTGCAGGAACGTCCCGTCTCCTCCGAAGCGACACGCACTCACAGAAAGCTGACGCTGATGACCAGTACGGAAGTCTCTACGGCCACCCGAGAGGCATCGGCATTCAGAATCTCGGCTGAATCGCTACTCCCAGaaactcctcctcctcttttgccgaacaaaaaaaaaactgtcacagAAGCAAAAGAGGTCACGGTGAAAGTCCTCCCCACTGGCTTTGCCGTCGAGCAATCAGCCATGGCATCCCAATGCAACGGACCGAAAGGCGATCGGATAAGTGATCAACAAATTACTGACCTAACAAAATACCCTGTGGAAATGGCGGACAGTAGAGGTTAGGTCTCTTGCTGATGTTTGTCCACTTTACCCACAGAGGgcaataatagaaaaataaaataatggtccCGTTAACATCTAATgtagaagacaaaaaaaaaaaaaaaaaacagatagcAGAACAGTATTATTCCTTGCTGAAGCACATCATGggataatacacattttttcctATTGGCTGTGTTGATAGCTAGTTCCTATGCACGTACCTCTTTCTGTATGGGAGAAATCACATCTGTGTGACTTGGGCTTTTTGGGGCTTTCAgttttctcattaaaatatgGATTAAAGGACTGATCTCATCCTTGACCGATCTTTCATATTAAGCGAGTTAAGCTGATGTAAACCTTACTGTGCTCTATGCTTCTTACGACTGACTTGATAAAATGCCTTCGGTTTTGTGATGATGGGCCAGGGAGAGATTTCGCCCGGTGAAGTCTGCTCTCCCGTGGACGGTAGGTTGGGATGTTTGGCTTTCACCATAAAAAGGTCTTTCCCCTGTTCTGCCCGTATAGCatcttaacaacaacaacaccggATTGTGAGCCTGTGGCACAGGGATATATCTGGAAGCACCACAAAATATCCCCAGCTGTAAAAACCCCAGCTTGTTCCATGTAGATCactgaaatgctttaaaataagtgtCATAGTTTGCTGGagaccaacaataataataactgaagcAATTCGAGTTTGCTTGTCGTCTTCCTTTGGTATATTCCCGGGCAGGACACTGGCTTGTAGTAAGCTGATCAGTGCCATGGACAGCCAGAAAGTTGAGTCTAGTATGAAAGTTGCATAGctttttgttactttttcaaaacacacacacacacacacacacacttttcacaATTGAGTCTGGACTGGCTGAAGAGGATCTACATACAGCCCTAAAGACAGCATGAAAAAATACTGAATGAAAATGAACCAAATATCTGACTAAATACACGTTTTTGTATATAGCTGCACTCCCAAAGTCATGTCTCAGTTATGCATTTAACTGTTTAGGAAACATTACTACTTCAGTTTATATCTGGTAGTCAAAGGTCATATCCTGAATACCAGGAAGTGCACATTTTTCTCACTAAAGTTCTCTTAAGTGCACATAACTAAACTGTAACAAAACTTGTAATTGGTAATGGAAACTAAGACACTAAATAGGCATTAGGTGGGGCTGGAGCACATTCATACGCAGTCTGTATAGTTGTGTACAGCCTGATTTGGAGAAGATTCGATTGGTTCCTTATAGAGGATTTTGGTTTTCTTACTGTGGAAGAGCTCCGGCCTCCCCGTTTATGCTTGATGTTGATGCTTCTTGATGACTTGATGGTGCCAGGGGATTGTAATTGGCACAAACAAAAGCCTTTGTAGGTTGGAGGCTGTGAGTGTCTCAGCTGCTGTCACCAGGGGGCCCTCTTCAGAGGCAAATGTTGATCTGTTTGGCAAGTTCCCTCTCCAGATCAGATATGAGCGTGTCAAAGTCCTTCAGGCTAAGCCTAGTGGTGAACGGGGCATCCAAATCAAGGGCTTGGGGATCCAGGGGGAAATCAGTCATGTAGAGAGGCCCCTGGGCATCCCAGTCTTTCTTCCTCAACTggccccctctctccccctcctcttcctcctcctcctcgctgtcAGTCCCTGCCACCTCGTCATAATCAGCTTCCGGCATAGACAGAAAGTCCCGCCCACACACACTCCAGTCACCCGCGTAGCGATTGCAAGGTGGGCTCTCCAGTCGGCCCCGCCCCCTCCTCGAGACCACCGAGTCCTTGGATAGTTCCAGTCTCAAGGCTGGCCTCTGGTGCCGCCATAGGGAACTCTGGGATACTGGAGGTTCAGGGGCCGGAGGGTCTAGGGTCCGTCCTTTCGGGACTGTtccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62800 lncRNA upstream 6778 5579222 ~ 5580022 (+) True G50206
TU62788 lncRNA upstream 26191 5560021 ~ 5560609 (+) True G50196
TU62777 lncRNA upstream 163755 5422823 ~ 5423045 (+) True G50185
TU62770 lncRNA upstream 431316 5149895 ~ 5155484 (+) True G50181
TU62769 lncRNA upstream 436943 5149468 ~ 5149857 (+) True G50180
TU62808 lncRNA downstream 1235 5592436 ~ 5592931 (+) True G50213
TU62809 lncRNA downstream 3511 5594712 ~ 5595052 (+) True G50214
TU62856 lncRNA downstream 350006 5941207 ~ 5941527 (+) True G50255
TU62949 lncRNA downstream 751493 6342694 ~ 6342978 (+) True G50336
TU62953 lncRNA downstream 781231 6372432 ~ 6372911 (+) True G50340
AMCG00008594 mRNA upstream 477996 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008593 mRNA upstream 531044 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 682727 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 751144 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 773893 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008601 mRNA downstream 23718 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 153603 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 175563 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 253144 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 290792 5881993 ~ 5883048 (+) True AMCG00008604
TU62655 other upstream 1014066 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 1421317 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 1426738 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2697904 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2816756 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 4822 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 147340 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1366410 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2342628 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2342628 7933829 ~ 7939771 (+) False G50583

Expression Profile