RNA id: TU62949


Basic Information

Item Value
RNA id TU62949
length 285
lncRNA type intronic
GC content 0.49
exon number 1
gene id G50336
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6342694 ~ 6342978 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcagactggggcgaaggttcatcttccaacaggacaacgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagcccagacttgaacctgattgaacatctctggagagatctgaaaatggctgtgcaccgacgctccccatccaacctgatggagcttgagaggtcctgcaaagaagaatgggagaaactgcccaaaaataggtgtgccaagcttgtagcatcatactaaaaaagacttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62856 lncRNA upstream 401167 5941207 ~ 5941527 (+) True G50255
TU62809 lncRNA upstream 747642 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 749763 5592436 ~ 5592931 (+) True G50213
TU62807 lncRNA upstream 751493 5586800 ~ 5591201 (+) True G50212
TU62800 lncRNA upstream 762672 5579222 ~ 5580022 (+) True G50206
TU62953 lncRNA downstream 29454 6372432 ~ 6372911 (+) True G50340
TU62955 lncRNA downstream 31687 6374665 ~ 6375034 (+) True G50342
TU62960 lncRNA downstream 147679 6490657 ~ 6518591 (+) True G50346
TU62981 lncRNA downstream 286460 6629438 ~ 6629646 (+) True G50362
TU62986 lncRNA downstream 303972 6646950 ~ 6651339 (+) True G50367
AMCG00008618 mRNA upstream 134943 6188494 ~ 6207751 (+) True AMCG00008618
AMCG00008617 mRNA upstream 223342 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008616 mRNA upstream 296824 6030847 ~ 6045870 (+) True AMCG00008616
AMCG00008604 mRNA upstream 459646 5881993 ~ 5883048 (+) True AMCG00008604
AMCG00008607 mRNA upstream 495013 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008626 mRNA downstream 349767 6692745 ~ 6719091 (+) True AMCG00008626
AMCG00008629 mRNA downstream 404733 6747711 ~ 6748885 (+) True AMCG00008629
AMCG00008639 mRNA downstream 968758 7311736 ~ 7315850 (+) False AMCG00008639
AMCG00008641 mRNA downstream 1011287 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008640 mRNA downstream 1029050 7372028 ~ 7376143 (+) True AMCG00008640
TU62843 other upstream 599944 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 745895 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1769960 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 2177211 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 2182632 4156088 ~ 4160062 (+) True G49980
TU63090 other downstream 614633 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 1590851 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 1590851 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 1970447 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 2107188 8450166 ~ 8666548 (+) True G50747

Expression Profile