RNA id: TU62955


Basic Information

Item Value
RNA id TU62955
length 370
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G50342
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6374665 ~ 6375034 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actgcatttctctccctgtttgtctgtgtaaacaaggtcactgtctcgcGGTCTTGCTatgctatggtactgtgccatagtgcaaccctgatacccagagggacagagtctgataagagacagttttctccagcaatttgggcttgatacatcgtacaaacctcccttatattaaacattacgtatgctttaattttccccggtttaaccatatatgggtttttCTAACGAGTTGTCAGACAGAAACCgaacttccactcatcacgggacagacatgtgggcctgttatctttctctcctgtctgatCTGTTTagaagtgcctgtagtttgtatcTTCtttaagactgttcttgagatcgcctcttgaac

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62953 lncRNA upstream 1754 6372432 ~ 6372911 (+) True G50340
TU62949 lncRNA upstream 31687 6342694 ~ 6342978 (+) True G50336
TU62856 lncRNA upstream 433138 5941207 ~ 5941527 (+) True G50255
TU62809 lncRNA upstream 779613 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 781734 5592436 ~ 5592931 (+) True G50213
TU62960 lncRNA downstream 115623 6490657 ~ 6518591 (+) True G50346
TU62981 lncRNA downstream 254404 6629438 ~ 6629646 (+) True G50362
TU62986 lncRNA downstream 271916 6646950 ~ 6651339 (+) True G50367
TU63093 lncRNA downstream 647427 7022461 ~ 7166940 (+) True G50450
TU63094 lncRNA downstream 665887 7040921 ~ 7050362 (+) True G50451
AMCG00008619 mRNA upstream 11635 6305726 ~ 6363030 (+) True AMCG00008619
AMCG00008618 mRNA upstream 166914 6188494 ~ 6207751 (+) True AMCG00008618
AMCG00008617 mRNA upstream 255313 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008616 mRNA upstream 328795 6030847 ~ 6045870 (+) True AMCG00008616
AMCG00008604 mRNA upstream 491617 5881993 ~ 5883048 (+) True AMCG00008604
AMCG00008626 mRNA downstream 317711 6692745 ~ 6719091 (+) True AMCG00008626
AMCG00008629 mRNA downstream 372677 6747711 ~ 6748885 (+) True AMCG00008629
AMCG00008639 mRNA downstream 936702 7311736 ~ 7315850 (+) False AMCG00008639
AMCG00008641 mRNA downstream 979231 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008640 mRNA downstream 996994 7372028 ~ 7376143 (+) True AMCG00008640
TU62843 other upstream 631915 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 777866 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1801931 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 2209182 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 2214603 4156088 ~ 4160062 (+) True G49980
TU63090 other downstream 582577 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 1558795 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 1558795 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 1938391 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 2075132 8450166 ~ 8666548 (+) True G50747

Expression Profile