RNA id: TU62977


Basic Information

Item Value
RNA id TU62977
length 654
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G50361
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6626109 ~ 6627025 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggatgagagccgaaatcccgacatagagctatgaacccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaagaactcagggaccaatcacctattgatctgacagactataaggaACGCGGACAGTCTTTCtggctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactttattaaataaagaactttacagactgcgcatgcccgcctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgtatacgaaagtgtcagtcatttaaatagctatttgagtcttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62950 lncRNA downstream 283408 6342676 ~ 6342964 (-) True G50337
TU62872 lncRNA downstream 684845 5941195 ~ 5941527 (-) True G50268
TU62867 lncRNA downstream 840044 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA downstream 896329 5729050 ~ 5730043 (-) False AMCG00008609
TU62815 lncRNA downstream 1016043 5608353 ~ 5610329 (-) False AMCG00008602
TU62993 lncRNA upstream 19986 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA upstream 20616 6647641 ~ 6651297 (-) False G50372
TU63004 lncRNA upstream 65781 6692806 ~ 6706289 (-) True G50381
TU63071 lncRNA upstream 212052 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA upstream 215502 6842527 ~ 6885687 (-) True AMCG00008633
AMCG00008625 mRNA downstream 26111 6591233 ~ 6600261 (-) True AMCG00008625
AMCG00008621 mRNA downstream 70073 6520531 ~ 6556299 (-) True AMCG00008621
AMCG00008622 mRNA downstream 155639 6415940 ~ 6470733 (-) True AMCG00008622
AMCG00008620 mRNA downstream 229350 6391144 ~ 6397022 (-) True AMCG00008620
AMCG00008613 mRNA downstream 249716 6373524 ~ 6376656 (-) True AMCG00008613
AMCG00008624 mRNA upstream 24399 6651424 ~ 6659244 (-) True AMCG00008624
AMCG00008623 mRNA upstream 39838 6666863 ~ 6674622 (-) True AMCG00008623
AMCG00008628 mRNA upstream 89084 6716109 ~ 6719084 (-) True AMCG00008628
AMCG00008627 mRNA upstream 93557 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008631 mRNA upstream 171738 6798763 ~ 6804508 (-) True AMCG00008631
TU62870 other downstream 740922 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 833788 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2849018 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3717707 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4541366 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 320864 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 518600 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1274310 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1507556 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1641998 8269023 ~ 8269326 (-) True G50710

Expression Profile