RNA id: TU62994


Basic Information

Item Value
RNA id TU62994
length 3657
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G50372
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6647011 ~ 6651343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTCTAGTTTCAATATTGGTTAAGGATGTTAATCTGAAACTGAATAAGTCTAATAATTGTCTGAAAATaagatttacaaaacaaaacattgcaaagTATTTGATATCCTTTTGTAGCATTTCTGTTAAAAGGTAATGGTGTTCTAAAAGATGTACTATTAATACATAGcgagtttcattttattttcgaAATAAGGAGtaaaacactgtgtaaacaaaACGCAAACAATACTGTTCTTACAGGCaataacagtaaaacatttttaatcatataACAAAGTGAATATAACCATTACCTCATAAGTCTAGTCCTTACTTACAAAACAGctgctttattatatatttttttacttgggGAGAGGTTTGTATGAAACTTTATAGTTTTGCTGAAAAAATTACCAAAACCCgaattaaataattcagatttCGTATGAAGACTTAAATCCCCACATCACAATGTGAGGGCCTACTCAAATTAACAAGGTGTCATTTTATCTTAAGCTTTTACTTGGTCTCCGACATTTTAAGTCAGACTCTTTTTTGAAAGAGATTACgtccaaaatatttttgtatttttgtttttaaattctcaaatgttaggattttgaaaaactaaagaaacattacaatttcagaaatttagttaatcatttaaaaaaaagaaaaacctctaaagtaatttaaattattattgtgtttggtaTATTATGTACAAACCTTAGTGACTGTTACACTTAAGAGCACAGTGACATTTTGCTTAGAGTACAGCTTAATTTTACATGTTGTGTTGGTGCCGTTTCTTTGAACCACTGACttaaactgcattacagtgCTGAAATGTCCATCTTGCATGCATAATTATCTATTAATATATTCTGTTCTGTCTTCTGAATGAACTGACACTTTTTATCCCTGCtagggatttttgtttttcttcgtTTCAGTTTACAGTTTGTGCAGGTGTATAAATATCATGGACCAAATGTGTAAAGGTAGTGGTAAATCTATGCCTTTGGTCCTGTTTCTGTTCTCCATCGAAGCTGTGAAGTTCCTCAAGTCCAACAGGTTTTCAAAGCCTCTCTAAATAGTCTGCTTCAAACCTCAGAAGGAGGGATAAATTGCTCCCATTAAACCATAAACCTTGTGGCACTTGCCTTGGAGATctttaattaaaccactgaTGGATAATGAGATCTGTAGTTCAAAAGAGTGTCCAGTTCTCTTTATGAGGTCGATTGTTTTTGAAGGCTTGGGAAGAAAGGGAGTTGGTGGGTCATGCAGATGATTGAAATGGTACCTGATTGGCTGGTCAGTCAAGTGCCTTGAGAACAAAGAACAAAGTCCATCCCCACTTTTGTCTTCACAGTGCTCCCTAAGTGGTATTTTTATGAGAATTTCAACATCCCGAACTTCACAATATTAATTACCTCTGCTCAGTAAGCGTCCTATGTtctaatattgattttaatgccTTGTGTGTGCTCAGCTTATTCATTAAACTAATGGCTTCACCATATTTTAGCCTTTAATATCTAAGGCAAACCTGCAGTACCAGAATTGACCACCAGTAAATTTAACAAAATTACACTTGCAGACTTGTGTATGTCCTTCAGCagaaagaaaagtgttttcatATGGATTGTCATGTCTGTAGCATTTTCAAACCCTTGTTTATGGTTGTTTCCATGTgtcattctatttttttttttttgcttatgcTTTCTTATGCTTTCATAGCTTTCATACCTTCAGACATGACTGGGAAGTGGAGTTTATCCTTTATTTTTGAGCACTGGATTATCATGATAATGGAAGTGGATGAAGGGGTTGAAAATGGTTTCAGATTTTTTCCTACAATACTAGACTCATCTTTTTAGTTGTAATAAATTTATAAAATGGTAATACtgaaggaaatgcattaaagtgtaaaaaatgcataaaaggcCTAATCAGGGagaaaaaacttaaatattgttAGTTATTTTGACTTGTCTAGTTATCCTTCACATTTGTAGTAATTGGTTTTGGTTTAAGTAGTTTTACCATATCAATCcttgtgtaatgtgtaaaattgtaaagaaaagaaaaaaagttaatttaacaCTTGCACATCATTCCTGCATTTTGTGAGAACTGGGAATAAACTAACACTTGAATTGCTACCCAATAAACATCTGTAAATACCTGTATTGAGATCATGTTATGTAGAAGCTGCAGgctggtattgtttttttttatgattggtagatttttcttctttcttaagTCAAAAAGCAATTGTAAAGATCTGGGTTGATTTTAGGCTCTCTGTGGTTGAAATTGACAATCGTGATGTATGCATGAGTGCCAAATTATAATTGCTGCTGCTATTGGACCTGCTTTCCCTCTAGGTTAACAGTAAAGGACACTAACAGTACTCTCTATTTTAGAGTAGAAAAAACTCAATAATGGGCACATACATGCAGGGGGAGAGActactttttcattattttccacagtttCAATAATCAACGTCTTTGGATTGATGTTAAAAGGAACTTGTGTCTAAACCAAATAGGCTAAATCCGATTTAGGAACATGAATTTGATTGAAATGCTACAATTTCAATAGTCAATAAATTCTCGATCTCGATCATTATATGGAAACTTAGAATTGCATTCCTCAACAAACAGGATAAAATGACACAATCAATTTTTGCTGAAAGTAATGTactcatgaaaataaatctagtCTTCGTTTGATGGGTAGTATAGATACAATATGGTTGTTGCCTCCATTCTGTTGGAGAAATCTAACCTTtttatgggctagaaaaacacgTTTAAAAGGAGACCAGCAACATTCTGCAACCCGATCAGTAATTGTGAAAGTGATGGTGGCATACACTAAAGCATGTAGCCAGAGTACTTGCAAAGGATTGgtattggaaaatgttttttaataacattaacgAAAGTAGGGTCTAGGAGAGTAATGTACTTGTATactgttgaatgtttttaaattgttatttttaaagagcaTTCTGCAACAGTTATATTCTAATACAGTATACATTCATACAAGAGTAATTTAAGGAATTGAAAAGCACATGCTGTCTAAATGCTGAAGACTGAATTTTTAACTGTTTCCTTTCTGAGTATTGTTGTTGGGTTTAAAATCTAATCTTTGAAATGTGGTTTACTTGAAATCCTATATTCTTCACATCACATTTTCTTGTGTCAaatttacacttttatacttGTTATTTTAACTCCAGATGAAGTTAAAGAGGTGTGGCAGAATTTGGATTTCATGATCcagcatttcatttatttttcattctttgaaTAAGTActactgttattgttttaaaaaaaaattgttgcaatgtgtatttttgtatgcagtAGGCATTTgaagtattcatattaaaatgaatcccTTTTCCTGATCTTAAACAACTGGTATATTTGAGGTCAATTGTATTTCCTCACTACAATTTGAAAGCTATGCTAGGTGCTGCTGTAGTGTAAGGAATGGACCTGAAGATATTGACCAGAACTATAGAGGGAAAGGGAGTATGGATTAGTactatcaaaatgtattttatgtcagTGTTATGTTATATAGAACAAATAGTGAACAGTTGTAATACCTCCATTAAATTTCACCat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62980 lncRNA downstream 20616 6626109 ~ 6627025 (-) True G50361
TU62977 lncRNA downstream 20616 6626372 ~ 6627025 (-) False G50361
TU62950 lncRNA downstream 304677 6342676 ~ 6342964 (-) True G50337
TU62872 lncRNA downstream 706114 5941195 ~ 5941527 (-) True G50268
TU62874 lncRNA downstream 917598 5729050 ~ 5730043 (-) False AMCG00008609
TU63004 lncRNA upstream 41509 6692806 ~ 6706289 (-) True G50381
TU63071 lncRNA upstream 187780 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA upstream 191230 6842527 ~ 6885687 (-) True AMCG00008633
TU63077 lncRNA upstream 252780 6904077 ~ 6904389 (-) True G50435
TU63079 lncRNA upstream 254043 6905340 ~ 6905577 (-) True G50437
AMCG00008625 mRNA downstream 47380 6591233 ~ 6600261 (-) True AMCG00008625
AMCG00008621 mRNA downstream 91342 6520531 ~ 6556299 (-) True AMCG00008621
AMCG00008622 mRNA downstream 176908 6415940 ~ 6470733 (-) True AMCG00008622
AMCG00008620 mRNA downstream 250619 6391144 ~ 6397022 (-) True AMCG00008620
AMCG00008613 mRNA downstream 270985 6373524 ~ 6376656 (-) True AMCG00008613
AMCG00008624 mRNA upstream 127 6651424 ~ 6659244 (-) True AMCG00008624
AMCG00008623 mRNA upstream 15566 6666863 ~ 6674622 (-) True AMCG00008623
AMCG00008628 mRNA upstream 64812 6716109 ~ 6719084 (-) True AMCG00008628
AMCG00008627 mRNA upstream 69285 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008631 mRNA upstream 147466 6798763 ~ 6804508 (-) True AMCG00008631
TU62870 other downstream 762191 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 855057 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2870287 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3738976 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4562635 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 296592 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 494328 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1250038 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1483284 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1617726 8269023 ~ 8269326 (-) True G50710

Expression Profile