RNA id: TU63077


Basic Information

Item Value
RNA id TU63077
length 313
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G50435
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6904077 ~ 6904389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttGCCACAatgcaaaaatggttcaggaatagtttgaggaacacaacaacgagttcagggtgttgacttggcctccaagttcccagatctcaatccaatcgagcatctgtgggatgtactggacaaacaagtccgatccatggaggccccacctggcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccatagcacaccttcagaggtctagtggagtccatgactcgacgggtcagggctgttttggcagcaaaagggggacctacacaatattaggcaggtggtcataatgtt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63071 lncRNA downstream 18390 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA downstream 18390 6842527 ~ 6885687 (-) True AMCG00008633
TU63004 lncRNA downstream 197788 6692806 ~ 6706289 (-) True G50381
TU62993 lncRNA downstream 252734 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA downstream 252780 6647641 ~ 6651297 (-) False G50372
TU63079 lncRNA upstream 951 6905340 ~ 6905577 (-) True G50437
TU63139 lncRNA upstream 20539 6924928 ~ 6925980 (-) True AMCG00008634
TU63163 lncRNA upstream 462236 7366625 ~ 7366930 (-) True G50496
TU63185 lncRNA upstream 474649 7379038 ~ 7379487 (-) True G50514
TU63230 lncRNA upstream 749691 7654080 ~ 7657391 (-) True G50557
AMCG00008633 mRNA downstream 41259 6847579 ~ 6862818 (-) False AMCG00008633
AMCG00008630 mRNA downstream 74378 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008631 mRNA downstream 99569 6798763 ~ 6804508 (-) True AMCG00008631
AMCG00008627 mRNA downstream 161848 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008628 mRNA downstream 184993 6716109 ~ 6719084 (-) True AMCG00008628
AMCG00008632 mRNA upstream 4385 6908774 ~ 6915444 (-) True AMCG00008632
AMCG00008634 mRNA upstream 16318 6920707 ~ 6933089 (-) False AMCG00008634
AMCG00008635 mRNA upstream 95165 6999554 ~ 7009561 (-) True AMCG00008635
AMCG00008636 mRNA upstream 309280 7213669 ~ 7276093 (-) True AMCG00008636
AMCG00008637 mRNA upstream 411737 7316126 ~ 7337849 (-) True AMCG00008637
TU62870 other downstream 1018627 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1111493 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3126723 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3995412 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4819071 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 43500 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 241236 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 996946 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1230192 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1364634 8269023 ~ 8269326 (-) True G50710

Expression Profile