RNA id: TU63135


Basic Information

Item Value
RNA id TU63135
length 765
RNA type TUCP
GC content 0.36
exon number 4
gene id G50476
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6947889 ~ 7151472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCCTTTTTAGAGTTgctaaatattaattattttacatatattattgtttttagatTGCTCACATTCAAAGCCATTTCTCACTTCTTCATTATGGGCTGCAGCTGGATCTTGGGTTTCTTTCAAACGATCGGATTCTTGAGTTATGCCTTTGTCATCGTCAACTCTCTTCAGGGCCCTTTTATCTTCCTTGTACATTGTGTACTGAACAAACAGATAAGAGCAGAATACAGAAGACTTTTCAGACTCATGCACAAACAGAAGGAGAAACACGAATCATCTGCAATTACCATGGGAACTTTATCTGATACTGCTGGGCCCAGCACAGCCAGTGTGGTTCCCTGCTCTTCTGATCCCAGTGATGCTTGTCTtaccagagacagagaggaTGGATCTACTTCACAAATGccctgaaaacaaaactgacaaaaacTGATGGATTTGGATATATTACTTTAAGATACTGTTGAAGATTTAGCTTTGCATTATGATAAATATATTCTGAGcttgtatatgttttgtttgattttatacatCTATTCAGATACAGGGAGTTTCAGtcaaatactgaaaaaacatatttatgtaacCTAGTACACATCTTTTAAGCAGTTACATTTGTTAATAGAGAATTGGGATCTagaagaaaaggggggaaattGCTGTTTTAAACCGAGAACTGttgtatacttttgttttttaagagtaTTTTTGAGATATTGACTGCTTTATGTGTACCGTGCATTAATAAAGTTTGTGACTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63139 lncRNA downstream 21909 6924928 ~ 6925980 (-) True AMCG00008634
TU63079 lncRNA downstream 42312 6905340 ~ 6905577 (-) True G50437
TU63077 lncRNA downstream 43500 6904077 ~ 6904389 (-) True G50435
TU63071 lncRNA downstream 62202 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA downstream 62202 6842527 ~ 6885687 (-) True AMCG00008633
TU63163 lncRNA upstream 215153 7366625 ~ 7366930 (-) True G50496
TU63185 lncRNA upstream 227566 7379038 ~ 7379487 (-) True G50514
TU63230 lncRNA upstream 502608 7654080 ~ 7657391 (-) True G50557
TU63231 lncRNA upstream 510680 7662152 ~ 7662442 (-) True G50558
TU63233 lncRNA upstream 517376 7668848 ~ 7676186 (-) True G50560
AMCG00008634 mRNA downstream 14800 6920707 ~ 6933089 (-) False AMCG00008634
AMCG00008632 mRNA downstream 32445 6908774 ~ 6915444 (-) True AMCG00008632
AMCG00008633 mRNA downstream 85071 6847579 ~ 6862818 (-) False AMCG00008633
AMCG00008630 mRNA downstream 118190 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008631 mRNA downstream 143381 6798763 ~ 6804508 (-) True AMCG00008631
AMCG00008636 mRNA upstream 62197 7213669 ~ 7276093 (-) True AMCG00008636
AMCG00008637 mRNA upstream 164654 7316126 ~ 7337849 (-) True AMCG00008637
AMCG00008638 mRNA upstream 189962 7341434 ~ 7342284 (-) True AMCG00008638
AMCG00008642 mRNA upstream 235580 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008647 mRNA upstream 282848 7434320 ~ 7517842 (-) True AMCG00008647
TU62870 other downstream 1062439 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1155305 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3170535 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 4039224 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4862883 2078703 ~ 2085006 (-) True AMCG00008474
TU63287 other upstream 749863 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 983109 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1117551 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 1118852 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 1118852 8270324 ~ 8294354 (-) False G50712

Expression Profile