RNA id: TU63219


Basic Information

Item Value
RNA id TU63219
length 2045
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G50546
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7674141 ~ 7676185 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTGGTTACTAGAAACTAAATGGTCAAATAAATCCATCAATCTGATTCTTTAAAGTGCCCATGGATTCAGCTCAACATTTTCTTCCAGACCCCCACAACTAATGAAgtgtcttgtttattttgttttgaagcctCTTGAACCGGTTTTCCACTTGTATCCCCTGGTTCTTGTATCTTTGCTGATCTTAAACATGTCCTATGGTTCGACATGGTTAATTCCTCTCAGAATCTTGAATAGCTCAATACCTGAGCTACCAGTCTTCACGGTACTGTAGCTGCTGCATTGACGCAAAGGTTATTAATGTTAATCCTTCCTGGTAGTACCTAATTATAAGTGGTAATACTTTTGTGAAATAGCCTGCTGCCCCGAATGCTTCTTAAACTGAGCCATACACAATGCTAATGAGGAAACAAGACCTGGGTGTTCCTGAAACCACAAGGcatgatcaaattaaaaaagaaaaactatttgtcATTGTAAGGTTTTAAGGATTGTTAGTTTACCTTAATTGTCAGATTATTTCAATGCTTTTGGTAATTGCCCTGTTGCAATGTCTTCCCTTTTGCAGATATTCATCTGCTATAATAGACCAGTTTGTGAATGACCTTCCAAAGAAGAATGCTTTTCTTGGACTATAGGAAGTGACACAATGTACATTTGATAGGTTGGCAATGCGATGCATGTAACAACTCAGCGAAATCcccaatgtttttattttgtcaaaaggAGCCTTTTTCAGCTGTCagataaatgttatgttttttcaaCTCTTGACACTAGTTTCAGTATTATATACGTACAATGTTGTCACGGTACACACAGTATGTGGATCTTTCACCTTTTGTCATTGTCCCCAGGTAGTAATGCTTCAGTCCATTTCTTCCAGCTTTTCAAGGTATCTGTAAAACATGGAATGGGTTCTATTGTACAAAGAGCTCGTGCTCATTAACTTTGGGGTCAGAAACTCAGGTATGACCTCAATTGCCTACTGGACTGTGGCTCCTGCCCTTTTTAATACAGCAGACCCTGCCTgcataatgaaatatttaacataatCTAATCATCCCATAAGCACAAGGGTGTCCAATATCTTTGCTTGTCTAAAAACAAGTTGAATTAAAAAGGATGTACAAAGCCTTGACATCACATTCATATAAACAGAAAGTATCTCTAAAATCCTTTCAAAATATACCTGCATAAAATTGTGCGTTTGGTGCACAATTACCAAATCCCTCAATGGGTCGTACAGCAGAAGAGGCTAGCCTGGccatcatgttttatagatcGCTATTAACCATCAGCTTCTAAAGACTTGCATTAAATTATGTCAATAGTAGACTACTGTTCTCATAAAACAGATTCATTCATTGAACAAGTTAAGACATCAGTTCATAAGTCCAGGGGTAACcattcttcttaaaaaaaaatctatagttCAAAGCTTCTCCTGCATGTTaccacagagaaaacatgcatgAACCAATAATGGCTCACTCTTGCCAACTATAGAGATATAGAGGGAAAATGTGTCTGAATAATACTGAGCCAGCTCTGATTCAAGCCATGGTTTATACCATCAGTGTAACAAAACATAGCTCATAATGCATAGATGTACTGAATATGTTCCTTTAGTTTGCTGTATCTGTAGTGTAGTACATTATGGACAACTGTAATAAGGATGTcccatgtttttgttgttcttatttattCACATATTTTGCCAAatcttttacatattttaagccTGTTTATCTTATTTGACCTCCCTCTTCcattatgtggaaaaaaaagattttactCATTTCAGGTCTGTctgttgtgtaaataaataaacaaataactggattttgtatttattttttgtaaatagtaTTTCAAGGTGctatgtaaaatgcatttccacAGCTGTTCAATGAAAGCCATAagaaattgttttatgtattttaataatgcagtaaaaagAAGGAGGGGGGAAagctacaaaaacaataatatatggCTCAACTACAACTTGtaaaaccaagaaataaaatacattctgtg

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63206 lncRNA upstream 131291 7532974 ~ 7542850 (+) True G50534
TU63177 lncRNA upstream 294635 7379048 ~ 7379506 (+) True G50506
TU63121 lncRNA upstream 358320 7296886 ~ 7315821 (+) True AMCG00008639
TU63122 lncRNA upstream 358320 7296886 ~ 7315821 (+) False AMCG00008639
TU63128 lncRNA upstream 358320 7296886 ~ 7315821 (+) False AMCG00008639
TU63235 lncRNA downstream 16751 7692936 ~ 7828902 (+) True G50561
TU63237 lncRNA downstream 63010 7739195 ~ 7740429 (+) True G50563
TU63252 lncRNA downstream 148698 7824883 ~ 7826540 (+) True G50571
TU63261 lncRNA downstream 220668 7896853 ~ 7900191 (+) True G50579
TU63304 lncRNA downstream 314240 7990425 ~ 7990717 (+) True G50616
AMCG00008648 mRNA upstream 4797 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008644 mRNA upstream 121359 7543720 ~ 7552782 (+) True AMCG00008644
AMCG00008643 mRNA upstream 178136 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008645 mRNA upstream 257911 7415799 ~ 7416230 (+) True AMCG00008645
AMCG00008640 mRNA upstream 297998 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008649 mRNA downstream 46056 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008651 mRNA downstream 107423 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008652 mRNA downstream 325411 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008653 mRNA downstream 345483 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008657 mRNA downstream 424410 8100595 ~ 8101654 (+) True AMCG00008657
TU63090 other upstream 656016 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 1931391 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2077342 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 3101407 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3508658 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 257644 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 257644 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 637240 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 773981 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1405642 9081827 ~ 9087967 (+) True G50900

Expression Profile