RNA id: TU63252


Basic Information

Item Value
RNA id TU63252
length 1633
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G50571
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7824883 ~ 7826540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGACTCGCCCCCGCATTCAGCCCTGCACTACAATACATGAGTAAAGATTCACATGAATGTGTTTCAAGGTAAGCTTTTAACCCAGGGTTGAGAATCTCAATCTCTAACAGGGCGAGTTCACCCCGGCTTCAGAGTTTCGTCTCAGGTTGAAGATATGACAATGTGAAAGTGCTCGATTTTCGACCAGTGATCGCCCTTGTTCAACTGtctagtgtgaaagcagctttagataaaagtttatttgaaatcaCAGTTGATATACAATGAAGGGGAAAAAGCtttgattacaaaatgcattgatttacaAACGAGACAAACAGActagtacattttcttttgatggtCAATGTCTCAATCTGTAATTTCATGAAAAAGAAAGTCAAAAGCTAACATGATttgaattatgaaaaataattaaagagcACTTTAATCAAACCAAATCTGGTCTACTGGCATCTCACTGAAtttcaaccctggtcctggaatgCCAATTACtttattagaaatgttttttggttAGTCTGTTGTGAAAACAGGGGAGATAGTGGAAGTCATGATTTAAGCAGTGGTGTAGTCCCTCAGTAGGCCATGTTGATTTAACAATCAGATCTGATATTTGGAAGGTATTAAAGTGCAATTTCaaatttgtaataaatacatgcgtacatttaaaaaaattaaataaactggaaCTCAATACTGCCATCACTTGTTAGCCACAATTACACAAATCAATCATTGTACCATATGCTGATATTGCAGGGGAGAAAGAGTTACaggactttaatttaatttctgattattgtattttttttttGTCAGCTGAGCTCACCACAGCACTCCACAGCCTGGAGCCAGCAAAGCCTTTGCACATTTCTTGGGTTGGCTTCCATCACTTGTACTAAAAAGGCAGTTCTGGGGAACCCTGGTTCTGGAAGGCTACCATGACTGTCTTGTTTAGTTCTACCCCAAATGTGAACCAATGAGAACAGCTATAAAACGGCCATGGAAGAATGCGTGTTCATTATATTattgaagtatatatttttttattacacagatCTATCCATTTGTTTCACAATGCTTTGTTTGGTTTACCTGGAGATCCTTTCAGGCCCTCTTTTGGGTTATTCAGTTGTGACTGCATAAAAAGAATGAAATCTGCTTGAAAATGAATAACCTGAATGTAAAACTTGATGCAAAGTGATACTCAAATGCCCTTGCCTCCCAAATGCCCCCACACCAATCTCAGGGCTTTGGCACAATGCTGCCACCCTGGCAATCGGAGCCAAAAAGTGTGTCCTGACGTCTCTCACTAACGTGTGACGCAGGGCCGGAGCAGCACTTCCAGTGATCACGAAAGCCAAGTCTGCTAGGTGTACAGCTGGGAATTAGAGGTCATGGAGGATGATCTGGAAGACTACGCTGTACTACACCACTCCCTCGGGTCTGCAACCACATGTTTTCACTCTGAGCTCTGCTGTGGGTTGTTCTTCCCTGGCAGGTGCTGACGGACATCTAAAGACCCCGTTTAGAGGGGAGTCACTGGTCATCATCTAGTTGCTGCAAAAgagtcctcctcctcttctccagCTCTCCTTCGCTCAGTTCACTCTCTGAGGTGTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63237 lncRNA upstream 84454 7739195 ~ 7740429 (+) True G50563
TU63219 lncRNA upstream 148698 7674141 ~ 7676185 (+) True G50546
TU63206 lncRNA upstream 282033 7532974 ~ 7542850 (+) True G50534
TU63177 lncRNA upstream 445377 7379048 ~ 7379506 (+) True G50506
TU63122 lncRNA upstream 509062 7296886 ~ 7315821 (+) False AMCG00008639
TU63261 lncRNA downstream 70313 7896853 ~ 7900191 (+) True G50579
TU63304 lncRNA downstream 163885 7990425 ~ 7990717 (+) True G50616
TU63305 lncRNA downstream 169215 7995755 ~ 7996061 (+) True G50617
TU63317 lncRNA downstream 242220 8068760 ~ 8075004 (+) True G50627
TU63372 lncRNA downstream 363285 8189825 ~ 8190785 (+) True G50668
AMCG00008651 mRNA upstream 5641 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008649 mRNA upstream 99699 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008648 mRNA upstream 155539 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008644 mRNA upstream 272101 7543720 ~ 7552782 (+) True AMCG00008644
AMCG00008643 mRNA upstream 328878 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008652 mRNA downstream 175056 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008653 mRNA downstream 195128 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008657 mRNA downstream 274055 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008656 mRNA downstream 299459 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008663 mRNA downstream 417501 8244041 ~ 8273718 (+) True AMCG00008663
TU63090 other upstream 806758 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2082133 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2228084 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 3252149 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3659400 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 107289 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 107289 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 486885 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 623626 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1255287 9081827 ~ 9087967 (+) True G50900

Expression Profile