RNA id: TU63261


Basic Information

Item Value
RNA id TU63261
length 262
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G50579
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7896853 ~ 7900191 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCTTCTACTATTGcaactactattactactaccactactgcCATTACAGTGGGGACTGCTGGATTGACTTTTCCATCCTACAGAAACATAAACAGACaccaagacagagagagagagactgaaaccCGGTACAGACTGATTGAGGTACAGAAGACTGTCCAACCATAGTTTGGAGGATGAAAGTGGGTGTAATTGTTTGGATCGTCCTCCttgcagCCTTTCTGATTTTCACCGCACTGTCAGAGACCTCAGCCACCAG

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63235 lncRNA upstream 67951 7692936 ~ 7828902 (+) True G50561
TU63252 lncRNA upstream 70313 7824883 ~ 7826540 (+) True G50571
TU63237 lncRNA upstream 156424 7739195 ~ 7740429 (+) True G50563
TU63219 lncRNA upstream 220668 7674141 ~ 7676185 (+) True G50546
TU63206 lncRNA upstream 354003 7532974 ~ 7542850 (+) True G50534
TU63304 lncRNA downstream 90234 7990425 ~ 7990717 (+) True G50616
TU63305 lncRNA downstream 95564 7995755 ~ 7996061 (+) True G50617
TU63317 lncRNA downstream 168569 8068760 ~ 8075004 (+) True G50627
TU63372 lncRNA downstream 289634 8189825 ~ 8190785 (+) True G50668
TU63396 lncRNA downstream 346386 8246577 ~ 8246832 (+) True G50692
AMCG00008651 mRNA upstream 77611 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008649 mRNA upstream 171669 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008648 mRNA upstream 227509 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008644 mRNA upstream 344071 7543720 ~ 7552782 (+) True AMCG00008644
AMCG00008643 mRNA upstream 400848 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008652 mRNA downstream 101405 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008653 mRNA downstream 121477 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008657 mRNA downstream 200404 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008656 mRNA downstream 225808 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008663 mRNA downstream 343850 8244041 ~ 8273718 (+) True AMCG00008663
TU63090 other upstream 878728 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2154103 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2300054 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 3324119 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3731370 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 33638 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 33638 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 413234 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 549975 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1181636 9081827 ~ 9087967 (+) True G50900

Expression Profile