RNA id: TU63298


Basic Information

Item Value
RNA id TU63298
length 434
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G50611
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7972602 ~ 7973752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctctctttctcactaaTTCCATAGTGTCACATCAAACATAATCTATGCTAGTGTGGTGTACAAGTTCAAAGATGGAGATATTGCCAACCCCAGCACATTCCTGTCTGCGCTCTTGGAAGTCAGCGACAAAGGTAGCCTGACCCTAATCTCCACCACACCACCTTCACCTGTCCTGCTGCCCGTAGTGACACCCACCCCTGGCAGCAGAGATCCTGGCATCTGGGGTGTCGCCATTGCTGTCCCCATCGGGGTTGCCCTCATCCTGCTACCTTGCTGGATCGCGCTCTGTtgtgtgctgtgtggctGCTGTGCGGGACTCAGGAGGAGATGGCAGCGAAGGCGATCCTATCCAGTGCAATACACTACCAGAAACGGCCTGTTCTAAACAGGTAAGACAGTGGACAAGTCTAAAACTGAGCGAAATATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63233 lncRNA downstream 296416 7668848 ~ 7676186 (-) True G50560
TU63231 lncRNA downstream 310160 7662152 ~ 7662442 (-) True G50558
TU63230 lncRNA downstream 315211 7654080 ~ 7657391 (-) True G50557
TU63185 lncRNA downstream 593115 7379038 ~ 7379487 (-) True G50514
TU63163 lncRNA downstream 605672 7366625 ~ 7366930 (-) True G50496
TU63303 lncRNA upstream 10988 7984740 ~ 7984951 (-) True G50615
TU63323 lncRNA upstream 31886 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA upstream 125020 8098772 ~ 8099445 (-) True G50646
TU63341 lncRNA upstream 131620 8105372 ~ 8105602 (-) True G50647
TU63355 lncRNA upstream 163723 8137475 ~ 8138061 (-) True G50657
AMCG00008655 mRNA downstream 111066 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008650 mRNA downstream 226298 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008646 mRNA downstream 429715 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008647 mRNA downstream 454760 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008642 mRNA downstream 569782 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008654 mRNA upstream 63280 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008658 mRNA upstream 166299 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008662 mRNA upstream 210699 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008660 mRNA upstream 218500 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008659 mRNA upstream 257927 8231679 ~ 8244280 (-) True AMCG00008659
TU63287 other downstream 69996 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 821130 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 821130 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 2087152 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 2180018 5787750 ~ 5792584 (-) False AMCG00008608
TU63350 other upstream 160829 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 295271 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 296572 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 296572 8270324 ~ 8294354 (-) False G50712
TU63430 other upstream 318047 8291799 ~ 8294354 (-) False G50712

Expression Profile