RNA id: TU63317



Basic Information


Item Value
RNA id TU63317
length 553
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G50627
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8068760 ~ 8075004 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTTGTGACTGTTTCTCTTGGCCATCTTGAAATCCCAAATACGGACTAGATAGTTGAAAATTATACAATGAAGGAGAAAAGCTGGTAAAGTCCAAACAAGGTCTCTCAGAGGGCTACAGTTTAAGTGGATGTAGTGTATCGTAGGACTGGGAATGGAGGATCTGCTCAGCTTTTGTTCGAAAGGTAAAAGGGGGGGGGAAATATGTCCTTTCAGTCTCGTTCACAAACTTGCTTTTAATGTCGCTCCAGTCTTCCCTAGACAGTCTAGTACCGCCtgctcctctttccttctctGTATCCGTCAATCTCTGGTGTCTCCCCCTCACAATGCAGCAACAGCTCACATTACAAACCCAGGGAACTTGGAAAGGAAGAGAGTCTGAAGTCAAGCGCAAGGCGCCACAGACCTCTGCAGGGATGAACACATCCTCCTTACAAGCTTAGAACACTGgcttCTTATTTTTAAGTGACCTTAAACTCcaaagcataaaaaaaacattgaaatatagGGTGCATATTGCACCGATATAATTTCTATAGATTCATATTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63305 lncRNA upstream 72699 7995755 ~ 7996061 (+) True G50617
TU63304 lncRNA upstream 78043 7990425 ~ 7990717 (+) True G50616
TU63261 lncRNA upstream 168569 7896853 ~ 7900191 (+) True G50579
TU63235 lncRNA upstream 239858 7692936 ~ 7828902 (+) True G50561
TU63372 lncRNA downstream 114821 8189825 ~ 8190785 (+) True G50668
TU63396 lncRNA downstream 171573 8246577 ~ 8246832 (+) True G50692
TU63402 lncRNA downstream 194003 8269007 ~ 8269326 (+) True G50698
TU63420 lncRNA downstream 203849 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA downstream 203849 8278853 ~ 8290801 (+) False AMCG00008664
AMCG00008653 mRNA upstream 32526 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008652 mRNA upstream 52016 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008651 mRNA upstream 249518 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008649 mRNA upstream 343576 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008648 mRNA upstream 399416 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008657 mRNA downstream 25591 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008656 mRNA downstream 50995 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008663 mRNA downstream 169037 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008665 mRNA downstream 201767 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008664 mRNA downstream 238411 8313415 ~ 8318696 (+) False AMCG00008664
TU63267 other upstream 128989 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 128989 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1050635 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2326010 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2471961 5596023 ~ 5596799 (+) True G50215
TU63407 other downstream 238421 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 375162 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1006823 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 1041733 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 1235082 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile