RNA id: TU63350


Basic Information

Item Value
RNA id TU63350
length 834
RNA type TUCP
GC content 0.41
exon number 1
gene id G50656
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8134581 ~ 8135414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtacccttacagctcatgtatacttgcatgcctttggaatgtcatagaataaagcaaagaagctgtgaaaagagattaataataattcgattatagtgatattccaaactaattactTTCTTTAagtagtatcacacatgtctctaatcttgtaatcagtcattcagcctattgaaatggaggaaagtagtcactgtgccgtttggtatcatcgtgtgcaccacactgaacatggaccagagaaagcaaaggagagagttgtctgaggagatcagaaagaaaataatagacaagcatggtaaaggtaaaggtaaaggctgcaagaccatctccaagcagcttgatgttcctgtgacaacagttgcaaatattattaagaagttcaaggtccatggaactgtagccaacctccctgggtgcGGCCtcaagaggaaaatcaaccccagattgaacagaaggacagtgcgaatggcagaaaaagaaccaaggataactgccaaagagatataagctgaactccaaggtgaaggtacatcagtttctgatcgcaccatctgtcgctttttgagtgaaagtggcctccatggaaaaataccacttttgaaagaaaaacataaaaaagccagactggaatttgctaaaatgcatattgacaagccacaatccttctgggagaatgtcctttggacagatgagtcagacctggagctttttggcaagtcacatcagctctatgttcgcagacgaAAAATGaatctttcaaagaaaagaacaccataccagtgaaacatggaggaggctcagttatgttttggggctgctttgctgcgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63341 lncRNA downstream 28979 8105372 ~ 8105602 (-) True G50647
TU63323 lncRNA downstream 29778 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA downstream 35136 8098772 ~ 8099445 (-) True G50646
TU63303 lncRNA downstream 149630 7984740 ~ 7984951 (-) True G50615
TU63298 lncRNA downstream 160829 7972602 ~ 7973752 (-) True G50611
TU63355 lncRNA upstream 2061 8137475 ~ 8138061 (-) True G50657
TU63371 lncRNA upstream 47515 8182929 ~ 8185121 (-) True AMCG00008662
TU63426 lncRNA upstream 143338 8278752 ~ 8290801 (-) False G50711
TU63427 lncRNA upstream 143338 8278752 ~ 8324775 (-) True G50711
TU63433 lncRNA upstream 145801 8281215 ~ 8283597 (-) False AMCG00008668
AMCG00008654 mRNA downstream 59557 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008655 mRNA downstream 273045 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008650 mRNA downstream 388277 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008646 mRNA downstream 591694 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008647 mRNA downstream 616739 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008658 mRNA upstream 4637 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008662 mRNA upstream 49037 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008660 mRNA upstream 56838 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008659 mRNA upstream 96265 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008661 mRNA upstream 116440 8251854 ~ 8273688 (-) True AMCG00008661
TU63287 other downstream 231975 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 983109 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 983109 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 2249131 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 2341997 5787750 ~ 5792584 (-) False AMCG00008608
TU63425 other upstream 133609 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 134910 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 134910 8270324 ~ 8294354 (-) False G50712
TU63430 other upstream 156385 8291799 ~ 8294354 (-) False G50712
TU63463 other upstream 232502 8367916 ~ 8371330 (-) True G50739

Expression Profile