RNA id: TU63402



Basic Information


Item Value
RNA id TU63402
length 320
lncRNA type intronic
GC content 0.43
exon number 1
gene id G50698
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8269007 ~ 8269326 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtaACAAGAGAAAAAGAGTCTGTACAAATGCACTTCAATACGATTCACATTTATTGCAACAGAAAAGTGCTTAAAACTTTTAAGAGGTTTCACAGGGACAGAGAAAGTTAAAACGTTGAAATTAAGAGAAGGGTTCAGGAAACTGAAATCTTTTGGAAGACAGTTTGAAGATCGTATTCAGTTGCAGCACTTAGTATTCTTCTCCCTCATCCTCCCCCTCTACACTATCGGCTCCAACTTCCTCGTAGTCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCAGAGAACTCGCCCTCCTCCATCCCCTCCCCCACANNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63396 lncRNA upstream 22175 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 78222 8189825 ~ 8190785 (+) True G50668
TU63317 lncRNA upstream 194003 8068760 ~ 8075004 (+) True G50627
TU63305 lncRNA upstream 272946 7995755 ~ 7996061 (+) True G50617
TU63304 lncRNA upstream 278290 7990425 ~ 7990717 (+) True G50616
TU63420 lncRNA downstream 9527 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA downstream 9527 8278853 ~ 8290801 (+) False AMCG00008664
TU63486 lncRNA downstream 303403 8572729 ~ 8589128 (+) True G50757
TU63573 lncRNA downstream 533880 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 725210 8994536 ~ 8994903 (+) True G50878
AMCG00008656 mRNA upstream 130946 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008657 mRNA upstream 167353 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008653 mRNA upstream 232773 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008652 mRNA upstream 252263 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008651 mRNA upstream 449765 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008665 mRNA downstream 7445 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008664 mRNA downstream 44089 8313415 ~ 8318696 (+) False AMCG00008664
AMCG00008671 mRNA downstream 88102 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008670 mRNA downstream 100381 8369707 ~ 8383963 (+) True AMCG00008670
AMCG00008678 mRNA downstream 399275 8668601 ~ 8669729 (+) True AMCG00008678
TU63267 other upstream 329236 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 329236 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1250882 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2526257 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2672208 5596023 ~ 5596799 (+) True G50215
TU63407 other downstream 44099 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 180840 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 812501 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 847411 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 1040760 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile