RNA id: TU63426


Basic Information

Item Value
RNA id TU63426
length 492
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G50711
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8278752 ~ 8324775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGAAGGACTACGAAGAGGTGGGCGTCGACTCCgttgagggagagggagaggaggaaggggaggagtATTAAATCCACCATATTTTGTTAGTCATTATGCACTGAATTAGTTCCTTTTGTTCATGTGAAGGTAGGTTTTTTTGTCATGTGCCTGGTGAGAAAATGTGTAATAGCAAAAAAGGCCATGAAAGAAGGATATCTACATTAAGGCTGTAACAATCTTCTAAAGATTAAATTAACTTAGTCGTCAGACCTGTGATCGTTGTCTATTCCTTTTTACATGTCTTGGCACAACTTGTGGTTTTGTCCATTACATGCAATAAATCTCACCATAAAAAGTACAGTGGTTTCGtcttgaatatatttttatttgtattgaaacaCTCTTTTACTTAGAATGATACTTGTACAATCTTGTCAAAACAATACAccattgtgaaaaaaatgtatacccTTTTTGTATCTCCTAATGCTGAAACTAGAATAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63371 lncRNA downstream 93631 8182929 ~ 8185121 (-) True AMCG00008662
TU63355 lncRNA downstream 140691 8137475 ~ 8138061 (-) True G50657
TU63341 lncRNA downstream 173150 8105372 ~ 8105602 (-) True G50647
TU63323 lncRNA downstream 173949 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA downstream 179307 8098772 ~ 8099445 (-) True G50646
TU63458 lncRNA upstream 66649 8357450 ~ 8360962 (-) True G50736
TU63465 lncRNA upstream 81705 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA upstream 89036 8379837 ~ 8384007 (-) True G50740
TU63521 lncRNA upstream 283213 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 546558 8837359 ~ 8840655 (-) True G50836
AMCG00008661 mRNA downstream 5064 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008659 mRNA downstream 34472 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008660 mRNA downstream 71575 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008662 mRNA downstream 88575 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008658 mRNA downstream 132518 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008669 mRNA upstream 25826 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008667 mRNA upstream 39098 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008666 mRNA upstream 42040 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008673 mRNA upstream 165716 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008672 mRNA upstream 211899 8502700 ~ 8504696 (-) True AMCG00008672
TU63428 other downstream 4237 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 9426 8269023 ~ 8269326 (-) True G50710
TU63350 other downstream 143338 8134581 ~ 8135414 (-) True G50656
TU63287 other downstream 376146 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 1127280 6947889 ~ 7151472 (-) False G50476
TU63430 other upstream 998 8291799 ~ 8294354 (-) False G50712
TU63463 other upstream 77115 8367916 ~ 8371330 (-) True G50739
TU63526 other upstream 365927 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 1100042 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2282682 10573483 ~ 10603373 (-) False AMCG00008744

Expression Profile