RNA id: TU63427


Basic Information

Item Value
RNA id TU63427
length 817
lncRNA type read_through
GC content 0.37
exon number 3
gene id G50711
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8278752 ~ 8324775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttgattCAACCATTTATTGCAGATCATTGTCAGAAGATGACAGACAAAAAAAAGGGGTAAAGTGAAATCATACCAATCACACACCTAAAATCAGAACAGAACACACAAAAACCAGAAGTTGTCAAGATTGTAACATCCTTAAATACAACTACAACATCTTTCATTACAATTTCTGAACTGACAGAACACCTACACCCTCAGTGTAACATCACAGCCTAAACTAATGCAGAAGTTAAGATGTGTTAACTTCTGACCAATGATGGGCATGCTGTAGTGACCAAAAGGACTTGAGGAGCCAGTTGGATTAATactcctccccttcctcctctccctctccctcaacGGAGTCGACGCCCACCTCTTCGTAGTCCTTCTCCAGGGCCGCCATGTCTTCTCTGCCACCATATTTTGTTAGTCATTATGCACTGAATTAGTTCCTTTTGTTCATGTGAAGGTAGGTTTTTTTGTCATGTGCCTGGTGAGAAAATGTGTAATAGCAAAAAAGGCCATGAAAGAAGGATATCTACATTAAGGCTGTAACAATCTTCTAAAGATTAAATTAACTTAGTCGTCAGACCTGTGATCGTTGTCTATTCCTTTTTACATGTCTTGGCACAACTTGTGGTTTTGTCCATTACATGCAATAAATCTCACCATAAAAAGTACAGTGGTTTCGtcttgaatatatttttatttgtattgaaacaCTCTTTTACTTAGAATGATACTTGTACAATCTTGTCAAAACAATACAccattgtgaaaaaaatgtatacccTTTTTGTATCTCCTAATGCTGAAACTAGAATAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63371 lncRNA downstream 93631 8182929 ~ 8185121 (-) True AMCG00008662
TU63355 lncRNA downstream 140691 8137475 ~ 8138061 (-) True G50657
TU63341 lncRNA downstream 173150 8105372 ~ 8105602 (-) True G50647
TU63323 lncRNA downstream 173949 8005638 ~ 8104803 (-) True G50632
TU63458 lncRNA upstream 32675 8357450 ~ 8360962 (-) True G50736
TU63465 lncRNA upstream 47731 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA upstream 55062 8379837 ~ 8384007 (-) True G50740
TU63521 lncRNA upstream 249239 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 512584 8837359 ~ 8840655 (-) True G50836
AMCG00008661 mRNA downstream 5064 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008659 mRNA downstream 34472 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008660 mRNA downstream 71575 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008662 mRNA downstream 88575 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008658 mRNA downstream 132518 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008667 mRNA upstream 5124 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008666 mRNA upstream 8066 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008673 mRNA upstream 131742 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008672 mRNA upstream 177925 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008674 mRNA upstream 225794 8550569 ~ 8565844 (-) True AMCG00008674
TU63428 other downstream 4237 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 9426 8269023 ~ 8269326 (-) True G50710
TU63350 other downstream 143338 8134581 ~ 8135414 (-) True G50656
TU63287 other downstream 376146 7901335 ~ 7902606 (-) True G50602
TU63134 other downstream 1127280 7145625 ~ 7151472 (-) True G50476
TU63463 other upstream 43141 8367916 ~ 8371330 (-) True G50739
TU63526 other upstream 331953 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 1066068 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2248708 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2352488 10677263 ~ 10718201 (-) False AMCG00008748

Expression Profile