RNA id: TU63463


Basic Information

Item Value
RNA id TU63463
length 1129
RNA type TUCP
GC content 0.45
exon number 2
gene id G50739
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8367916 ~ 8371330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCATCTGATAGCAAAGATCAACATCAAATTTCTACCAAAAAAAGTGTGATTGTAGATATGCACGTCCATTTCCCCTTAGCACTTAAAACGTACGTGGCACTTTAAcatcaaggaaaaaaacaatagctgAGCAATAACTTTTAATCGTCAGTCACAGTTGCATATGTCAACATATTACTGTTGGCGTGCATATTAGCGAATGAGTGTGTTTTAGTGGGCAAGcgcatatatattattatttgtaactaGACTGTAAATATTagtgtgcatttatttgtattgataagCTATTGATTGTATTGATGTGCATATTATTGAGTAAGTGGGTCTATGAAAGCCACTGTATTGTGCCCATGTATAAGTGAATCTAATAAATGTCTATTGTGTGTATTAGAGTGTGTATTTGTAACCAAATGTCTATATAAATCTCTCTGTGTAATAGTGAGTGTCTATATGAATGTCACTGTGTAGTAGTTGTAATTAAACTAGCATTtcactgcattgtgtgtgtgtgcgtgtattaACAAGGAAGAGATATAGAAGTGTATATAAACGTCTGTATTATGCACATGTATTTGTGAGCAAGTGTGTCTTTAATcgtctgtcttgtgtgtgtgtgtgtttcacagcAAACATGTATATATGCTGGACAAAGTCTGTCCATATGTCTGTATTGTAagcattctgtgtgtgtgcgtgtctacTGGTGAGCAAGTGTGTCTATATGCACCAGTCTCACCTCCAATGGTGCTCTCCTGGTATTCCTGGAATTGGCCCTTGACGAATCGCAGCACTAGGCTGGACTTGCCCACCGCCGACTCGCCGAGCAGCACCAACTTGAACTGGCACACCTTACCGGGCTGGGGCTGGCCATTGGGCCGCGACGGGCGCCCTGCCATAGCCAATGTTCAGGGACGGTGGTGTGGAGGAGGGGAGCGGGTGGTGTGGAGATgacaggggagggggggtgggggggatgggaGGGACAATGACCACGGGTTGGGGGCGAAAGGGGCTCCTCCAACTGAGAAGCTGGCCGGATCTTGTTGCCGGAAAAAAACCTGTCGCTCCgtttccctctctcttgccCTCTCTCCAATCTTTTCGCTGTCGGCGCTGCGGAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63458 lncRNA downstream 6954 8357450 ~ 8360962 (-) True G50736
TU63427 lncRNA downstream 43141 8278752 ~ 8324775 (-) True G50711
TU63426 lncRNA downstream 77115 8278752 ~ 8290801 (-) False G50711
TU63433 lncRNA downstream 84319 8281215 ~ 8283597 (-) False AMCG00008668
TU63371 lncRNA downstream 182795 8182929 ~ 8185121 (-) True AMCG00008662
TU63465 lncRNA upstream 1176 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA upstream 8507 8379837 ~ 8384007 (-) True G50740
TU63521 lncRNA upstream 202684 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 466029 8837359 ~ 8840655 (-) True G50836
TU63686 lncRNA upstream 773014 9144344 ~ 9149938 (-) True G50915
AMCG00008666 mRNA downstream 11363 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008667 mRNA downstream 35094 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008669 mRNA downstream 47619 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008668 mRNA downstream 74430 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008661 mRNA downstream 94228 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008673 mRNA upstream 85187 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008672 mRNA upstream 131370 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008674 mRNA upstream 179239 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008681 mRNA upstream 264470 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008682 mRNA upstream 330448 8701778 ~ 8717326 (-) True AMCG00008682
TU63429 other downstream 73562 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 73562 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 93401 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 98590 8269023 ~ 8269326 (-) True G50710
TU63350 other downstream 232502 8134581 ~ 8135414 (-) True G50656
TU63526 other upstream 285398 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 1019513 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2202153 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2305933 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 2305933 10677263 ~ 10700483 (-) True AMCG00008748

Expression Profile