RNA id: TU63464


Basic Information

Item Value
RNA id TU63464
length 4100
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G50740
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8372506 ~ 8384007 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTACTCCAAATTAACaatgaacaacaaaacaaaagtgtacaCTGTATAATAAGAAaggcaatttaatttattgtaatacaTACAGGTAGACAGTACATTTGTTTGCAGTCATtctttacatacattaaatacattgtgaaagtCACCTAGCTCCTTTACTTTAATTGTAACCTCCCAGCCAagacacttattttttattagcaaaTACTTGATTAAGAGAAAGTATAATGCAGTACGAGACAGTTAAAATACTGCAGCATCcccactgttttgtttttcttttctcattgtggaacaaattacatttcctcTACAAAACCAAGTTCCCTTCATGTTGAATCATAGGTTTGTGTATACAGGTACATTAAGCCAGTGTATTAAATCACTCCATTAGCTGATGGAACATCATAAAGTTTCACGGTTCAGTAAGTTTTCTACAAATTAATTTCTCCATCTTCACAATCTAATTGCATTTTAGCTGCACAAACACATTCTGTCTACCTCTGTTGCTGCTCCTCATGTTTGTTATTTGCAATACTGAGTGACTTCTCCAAGAAACACACAGGTCAAAGACCCCACTTGCTTGCCAGGAGTCATGCAGAGGAAGCAAACTCGAGGTTGGGAAGCCCAAGGCTGAACTATCATGTCATTCAAAATCTAATCTCAGTAAAAGCAACAGAGAAAGTCGGCAGATCGCACCATATGACTGGCAATAGCCCAGAATGGATAATAAAACTCCAGATTTAAATTGATCCTGCATAGACTGTAGCTGGGGACTAGGGCATGTACTAAAAGCCAAAGCCCTTGTTTAGCAGCTTGTGCTTAATTTGAAAAGACTCCCGCACTCCCAAGGAATGTACTGCTGAACAAACCAGTTGACAGGAATGCATATTTCACCCTAGCAAATAAGTCAATTTAATCTTCATACATCTTTCTATAAAGGATAAGTCACATGGTGTTGTATACAGATAGGCTCCATTTATTACTGATTattctccattttgttttctttcttaaaacCTTTTAACTTCAAATCAGGACCAGTTTCATAATGAAGCCCATCTTCATTAACTTCTGTActtttcaaactgaaaagatgcctttttattattttatatattgttcacATTAAAACCTGTATTGGGGTGTCTGAGTTTTGATTGTTCCCTTGATTTTTGGTCgaactactttttttttgtatgcaagCTGTTCCCATGTTTCAGACAAGGTATTCCATCTAGATTGGGGTGTCAAGTGTCAAGATTTCATTAGTTCCTCTCGATCACCACACATGCAGAAATAACTTGTAACAAGAcaagtttgtatttttgatacAGAAGCTTCACATTAACATCTTATAATCCAAATAATGAGGCAAAATCTTTAGTCCATATCTGAAACACAGTGGAATAATGAtagtcaaatgtaaaaatatgaatacacaatgtttaccttttaattctattttctgttttgtgcaaATCAGAATAGTTGccacaattgtgtttttttccattgtgaGCAAAGGGAACAAGACATTTGAACCTTGTCAGATACGAGAAACAATTTAACAGTCATTACGGCACAAGGGGATGCTGCATCCATTTAAAACAATcgaaaagaaaatgctttttttttttttttttcaaattgtacaCATACTTGATTTCATTCACACAGACTTGTTGTCTATAAAAGCCGAGTGTTAAATGTGGTTTAtaaaaatggaagtgaaaagAATGAAGCGatggggaagggagggaggcCAGGTGAAAGTATGTGAATggagtgttttgtgtttatgaaacaaaacatcctCCTATGTCTGCAACTGTGTTTATCCCCCAGAGCATGCATTTGCCTGCCCCGATGGGTGCTTCTATTGGTGTGAATCTGTTAAACTATCCATACCTACAATCTCAGGGACCCCCCTtgctgtatattttaagaacCCTCACTAATAAACATTTCCCCATATTACTCACGAGTGAGTGTTTTTGCTGGCTTACAGCTTACCCTCAATCACTGAATTTCCTCTGTGATGCTATAGTTGTACTTGTACAATAAACTTCACTTCACCAGAAAGCCAGTGCTCAGTTACTAATGAGGAGACTGTGTCCAGACCTGCCTTTGCTTGCTTCTCAACACTGTGGTCACTGCATTGGCCCCTTCAGACCCTCCAAGCATTGCCCTACTCACCCCATCACTCGATCAACTGTCTACCCCATCTCCAGCAGAATCCTATTCCTCTTTCCTAAAATATTAGGAATTTGGTAACTGAAGGGGTGGCGTGATAAAAAGCACCCCTTCCTTCGTTGAATCCACTCTAGtctacccccccccccgttATAAAATGCCTAATATTTTAATCCCACACTTCCCATTTATAGACTTTTTTTCTGTAGGATTATTGTTGTGGTCCATTTGTCACATCTGTCAGTCTGCCTTCCATCAAAGCTCTCAAGCacgatttaaaaatattttctagcCACCATTTCCAAAGCCAATACAATACCTTGGAATATAAACTTCCCTAAACTTGTGCAGAACAGGATCTTAAAATCAACAGGCCTTGGCTCTGAAATCACTGTTCACCACTTGGCCACATTGTTTTACACTGCATACTGCCACATACTTGCTGGAATACAGTTGGGATTTTCATAGTCAGACTGCCAACCAATAACCCTCTTGTCAGTTCTACTATGCAGGGCTTCACATTGAACACAAGCCAGCCCCCACTGCCATCCCTCTCTCTTATGGGCCTAGCCTGTCCGGGTTTATTAGAACAGATCTGAATTGGTCAAGTCTTAAACTCAACAGTGCAGTCTAGTACTTAACGTTCCTCACCAACGACTATTACAATGACCAAAAACTCAATGGtgtactaaataaaatgtacggCAAATTGTGGACCCATCACAGATCACAGCTGGGTAGTACATTTAGAGAAATATGGAGACCGATTTACCACAATGACCAACCTCTTTACTACCAAATGAGTAGTTAAATATGCATCAACTTTTTGCTACCAACCTTTGCTGTAAACCAGAGGTAATGCTTCTTAATCTTgggaaaaacacagacatgaaAGTAAAATCACCATATCAAAAAAGTACTTTTCACTCTCTGACATGCTGGACGTGGATACTTGAAATCTGTGGCAACCCTAATTGTCAGATGCACATCAGTGAATAATGAAAACCAACAAGTcgtttatacatttcttaactGAAACATCAGTGTAGGTTTCTGCATTTGTGTGCTGTGGAGTTTTGTTATGAATTGTGCCCTTGGAGATGGTGTAGAGAAGGTATTGAAGTCAGGTTTCGCCACTGCATTCACTGTGCTCAAATTCCATCTTTTAGCTGGAATGTGGCAAATGATGACTGACTGAATAATGGTGCGTCTATAGCAGATCCCCATTTCCTTGTATCAGAACTGCAGAATTGGTAAATGTAATGGAAATATTGGGGGCAGATCTGATTTGCGATTCTGTACTGCACACCTTCAACATTCTCCGGGTGAGGACTTGGCCCGGTGCCTTTCACCAAAACCAAAGCAGATCTCGAGATTCAGACATCTGTAGTAGTGCTGCTTCAAATCACTTACTACCCTTCAAACAGTTGCCCTGCTCCAGGGAAGCACTTGTCAAGCAGTTCATGCCAGTCCTTAGAGAGCACACGTCTGTTGTAACACTCTGCAATGTCCGTTATTGAAAATGGGCAGTGCTGTTATGGTTGTACACTTTGTCGAGGGAAATGATTTGAAGTGTGCGGCTGTCTCGTGGGATCAGCGTAGTAGCTGGGTGTGTCAGTGCAGAAGAGTCTCAAAGTGAGCCCAGGTTAGTGGGCTTCTCTCTGGGAAGGGTCAGTGGGTGGGATTAGACTGTGGGATTTAAGATATGAGGCTCAATTTGAGACACAGGGCTCTGACACCCCCTAGAATTGGTTCCAGTAATGCACTATCCACAATTCCCCTTCCCCAGCACTGGCTCTTGCTTGGCTGGCTGGGCTGGCTCAGATCCACTCCGGTGCGCCCCCCACGGCCCGGTGCCCCACCAGTGCCACCCTGGGGATCACTCTTTGGCAGCTTCTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63458 lncRNA downstream 18875 8357450 ~ 8360962 (-) True G50736
TU63427 lncRNA downstream 55062 8278752 ~ 8324775 (-) True G50711
TU63426 lncRNA downstream 89036 8278752 ~ 8290801 (-) False G50711
TU63433 lncRNA downstream 96240 8281215 ~ 8283597 (-) False AMCG00008668
TU63371 lncRNA downstream 194716 8182929 ~ 8185121 (-) True AMCG00008662
TU63521 lncRNA upstream 190007 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 453352 8837359 ~ 8840655 (-) True G50836
TU63686 lncRNA upstream 760337 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 992565 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 996744 9380751 ~ 9381754 (-) True G51002
AMCG00008666 mRNA downstream 23284 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008667 mRNA downstream 47015 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008669 mRNA downstream 59540 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008668 mRNA downstream 86351 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008661 mRNA downstream 106149 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008673 mRNA upstream 72510 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008672 mRNA upstream 118693 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008674 mRNA upstream 166562 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008681 mRNA upstream 251793 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008682 mRNA upstream 317771 8701778 ~ 8717326 (-) True AMCG00008682
TU63463 other downstream 8507 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 85483 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 85483 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 105322 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 110511 8269023 ~ 8269326 (-) True G50710
TU63526 other upstream 272721 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 1006836 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2189476 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2293256 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 2293256 10677263 ~ 10700483 (-) True AMCG00008748

Expression Profile