RNA id: TU63473



Basic Information


Item Value
RNA id TU63473
length 526
RNA type TUCP
GC content 0.55
exon number 4
gene id G50747
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8450166 ~ 8666548 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTTAGGTAGCCATTTATCTGCTGCAAACTTGTAAACAACAAACCTCCTCTCCTTTCCTTGCCATTTTTTTACACCATCCGTGCCTCAATGCGGAGATAGAGCGTTCTGAGGCTCAGAGTATGCGAATGCTCAGCACGTCGAGGACAATGAGAGCTCTCCTGGTGTGTCACAGGGTTTGGGAGGGGCTCATCCAGTCCATCCATGCCTGCACCATCCCCCGTTTCAAGAAGACCAGCTGTATCATGGcAGGTGCAGTCCGTGATAGGAGCACACAGAGCCAAACCCCGCTGCTGACTGCCACGCCCAGCCGTGCTCTTGTGGACCAGCCAGTAGAAATTGGTATCTGGCATCTACCTCCGAATAAGCCATTCACAGTGCGGTCCCACCTGCGCAGTGAGGATGGGGATCTGTGGGAAGCATTCTCGTATTACCGCAGTGACCAGAAGGGGACAGTGATCTTGTCCCGGGACCAGTCTTTGGGCGGTTCCTACAGCGGCCTGGAACCCATGGGTTTGTTCTGgagtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63420 lncRNA upstream 125388 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 159365 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 180840 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 203334 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 259381 8189825 ~ 8190785 (+) True G50668
TU63573 lncRNA downstream 136658 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 327988 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 525229 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 525982 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 526467 9193015 ~ 9193685 (+) True G50931
AMCG00008670 mRNA upstream 66203 8369707 ~ 8383963 (+) True AMCG00008670
AMCG00008671 mRNA upstream 85623 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008664 mRNA upstream 131470 8313415 ~ 8318696 (+) False AMCG00008664
AMCG00008665 mRNA upstream 156649 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008663 mRNA upstream 176448 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008678 mRNA downstream 2053 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008675 mRNA downstream 13785 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008677 mRNA downstream 28294 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008676 mRNA downstream 57525 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008679 mRNA downstream 97783 8764331 ~ 8771848 (+) True AMCG00008679
TU63407 other upstream 132564 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 510395 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 510395 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1432041 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2707416 5738541 ~ 5742750 (+) True G50243
TU63666 other downstream 415279 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 450189 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 643538 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 643538 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 643538 9310086 ~ 9316151 (+) True AMCG00008710

Expression Profile