RNA id: TU63486


Basic Information

Item Value
RNA id TU63486
length 2275
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G50757
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8572729 ~ 8589128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACGTGAAActctcaaaatgaaaacatggcGGAACAACGTGTCTCCCGGACTTGTATCCGCCGAAGAAGCGAATTAAATCAGATATTTGGGATCATTTTGGCTATCTAAAAAATGACACAGGAGTTGTTGAAGACGGGTGTGCAGTATGCAACACGTGCAGACGAAAAGTGTCAGCAAAAGCGGCGAACACATCTAATATGTTCCAGCACCTAAGGGATTACCATCCAGAGATTCATGCCCAGATGAAGACCCCGGGAGTTACTCGATATACCCAAAGAGAATTGGGATTGGCAACCCTGTCCACACAACATGGTTATTGAACATGTGGAGGAGATGAGGGACCGCATTAACCTTGTGATGCCCATTGTAAAGGAGCACCTCCTGCAAGCTCAAGAAGCCCAATGGAGAGTCTACAACCGGCCAGTCCCACCCAGAGAATTCACTCCTTTAGATCGGGTCCTTGTCCTGGTTCCTTGTACTTACCTTCCTAGTGTCATACCCATGTGATGCGACATGACATCATAACTGCCCCTGGAGTAAGGATCCACCAGAAGTCCTATCGGGCCCCCAAAGCTAGGCGGATGGCTATTAGGGAAGAAGTGAAGAAGATGCGGGATCTCAGAATTATTGAAGAGTCCACAGCCATTCTTGAGAGGAAAGTATGGAGTGCCTGACTGCAGTGATTGGGGCCCTGAGCCCCCAAAGAAGTGTATTCTAGCCGTAAGTGAGGCCAAGTATCTGGGGTACTCCATCAGACATGGTCTAATCAAACCCCAGTAAAAGAAAGTAGCAGCCATCAGGGATTGTCCATGGCTGGTCAATAAGAAGCAGATACGTGCTTTCTTGGGAATAACAGGATATTATCGGAGGTTCATTAAAGACTTTGCCACTATTTCAGGACCCTTGAGTGACCTGACCCGGAATGCATAGCCAACCATGGTGAAATGGACCCCGGCAGGGACCCCGGAGGCCACGTTTCACAGCTTGAAGGATGCCCTGTGTACTGCACCGGTGTTGCATTCACCTGATTTATCGCCCCTTCGTGGTACAGACTGATACATCTGACTCTGGGATTTGGGCTGTGCTTTTGCAGGATGTCGATGGTGAAGAACACCCGATCTTGTTCATCAGCCGTAAGTTGTTGCCACATGAAACTAAGTTTGCTACAGTGGAAAAGGAGTCTTTGGCAATTAAATGGGCACTGGTCTCACTTAAGTTTTATGTACTGGGCTGTGAATTCATCTTGATGACCGACCATGTGCCGCTCACCTGGATGAAACAGCACCAGGATACTTAATGCTTGGGTTACCCGATGGTTTTTGGGCCTTTTCGTTTTTGTCTGGTTCACCAATCTGGCTCTGCACATGGTAATGCCGATGCCCTCTCGAGGATGCACTCCATGTTTTCGGGGTCCATTCTGCCCTCGAGGTTGGAGTTGAGGGGGGGAGGTGTGTAGCAGGATGAGTGGGCGGGTCATAGATGAATGCTGTGTGCCTGCTCGGTTTCTCTCCTTTCTGGCCAACAGGACCACGAACAGCAGCATGAGGTCGGCAGCACTTCCAGGATCAGGACCACGGACAAGGATGTGGAAATTCCCAGAGTGCAGCAGAGCTGCCTCACCCCATGGCTAATGCAATCAACACAGGTGCAGCCCATCAGACCTGGGCTATATAATCAGGAAATCTTTCCACTCCTTTGTCTCAGTAGTTGGTTGGTGAAAGGACAAGGAGGGCATGCTGGAGAGCAAGAGTGAGGAGAGAACGGAGAgcgaaaacaaaaccaaaggcTGCTTACATGGATAAGGACATTTCTTAAGGAAGACAACCCCCCCTGGCATTGACCCTGGCCTGTGACCCATTAACGGATTTTGCAAGAGAGAACTGTTGTTTGCTTTCAGAAACTCATTGTCCTGGACAACTAGGAGCCTCtagtaactgaaaataaatagacatactCCTGTCTTCAACCCCATCTTgcctgtctttgtgtgtgttctaaTGCCTCTACCACGCACcctgctacaatatatatttgtaatattttgaggATCTCAATTTTGCCTTTCACATTTAAGCTTTGTCAGTGTTACCTTAAGCTTAACCACCATTTAACCACCTTAACCTAATTTAGACATGAagtttaatatttcaatgttgGTACTTCTTAttcctgtaaaaataataaaacactttctaatctttttgtgtgtccttttttgttaaaattttgaaatatggcctgttttcagaaatacacatttaaagtgcTGTTCT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63420 lncRNA upstream 247951 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 281928 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 303403 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 325897 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 381944 8189825 ~ 8190785 (+) True G50668
TU63573 lncRNA downstream 214078 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 405408 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 602649 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 603402 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 603887 9193015 ~ 9193685 (+) True G50931
AMCG00008670 mRNA upstream 188766 8369707 ~ 8383963 (+) True AMCG00008670
AMCG00008671 mRNA upstream 208186 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008664 mRNA upstream 254033 8313415 ~ 8318696 (+) False AMCG00008664
AMCG00008665 mRNA upstream 279212 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008663 mRNA upstream 299011 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008678 mRNA downstream 79473 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008675 mRNA downstream 91205 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008677 mRNA downstream 105714 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008676 mRNA downstream 134945 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008679 mRNA downstream 175203 8764331 ~ 8771848 (+) True AMCG00008679
TU63407 other upstream 255127 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 632958 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 632958 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1554604 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2829979 5738541 ~ 5742750 (+) True G50243
TU63666 other downstream 492699 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 527609 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 720958 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 720958 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 720958 9310086 ~ 9316151 (+) True AMCG00008710

Expression Profile