RNA id: TU63573


Basic Information

Item Value
RNA id TU63573
length 6091
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G50823
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8803206 ~ 8809391 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCTCCGCAACGCtgttatatacaatttaaataccatttaaaaaagaacaagacgCTTCCTTTACTGGGCGCATCCCCATATACTGGAAACGAAACCTCAAATGTgcaagaagaaaagagaaaacaagaagaataaaaacaagcaaaacttACTTTCCCCGTGCATTGGCCGGGAGACAAGggaaGAAACCTTCGTCATGGGGGGACACCGAGCCGAGGGCGAGCGGTCTGCccggacacagacacagcagcGCGGCTCCGGCCAGGCTGAGAAAGCGCCGCGGCGGCCCGGCCTCTATATTTACACGGTCTTTTTCTAAAAGCTTGTCtcgctgtctgtctctgtctctctctctctctccccctctcctctcctctcctctcctctcccggCTCTTCCTCACTCCGCTTCGGCTGCCCCTCCTGCTACAGctcctgttgttgtttgtctttttctcccATTAACTTCCGGGGGCAACCGCCGAGCCAACCGCCACGGCCAAACTTCAAAGCTGGTTTCCGCCGTGTTGAGCTCTTAACACCCCCTGTGCAGACGCCAGAAACGCGGCGGCGCCGATGTTATCGAGGGCGTCCAGAGAGAGATGGTGCGAGTGAACCGGAGCAGCTGCCAACGTGAGAAACACACTGGGCATCCGCTCAGTAAAACAGCAGCATGCATACCCCGTCTCCCTCACATGCAGGATGGATTGCACACCGTTTGGGGTTAGGCctacagtgtgtacagtactgAATCTGCAATACTGCATGTTAGCAACAGAGGCCGCTGTTGAATTTAAAGTTATGAATAAATGTGACTACAGTtcaaatgaacaacaaaatgCGTATATCACTCGATTTTCCCAAGCGACCTTTGATTCTGGTTTCATTGTAGTCGGTCTGTAAGTCAGTATTGACCTTTAGCCTGTAATGAGGGAGAAGAAATGCACACAGTGTTCCTACTGCTCTGTGGTGTTTTAATGAGAGGACTTTTCATTATGCATCTACAAAGGCAGCAAGCACagtcttttattaaaaacaagctAAATCAATAATCCACAACAGTCATTTAGTCAACCATAAATAAAGATGGTACAATGGACCTGCTCTTTAGAGACTTGTTCATAAAATACAGAGCATCTAAACATGGTAGAATCACTAGTTTCTACTTATCAGGCTCAGGGAGAAACTCTTTCTGATTTAAAACTTTCTTAGGTATTTAGTAATCTGGCCTAAAGACTGTTGaatctgcatttaaattcaTAAGAATTCTTCACATAATTTTAAATGGATTGTAAATACTACTCCATTCACTAAGATACCAGTTCATATAACATATAATCTTAGTCAAACTAATCTGCTCAGGCTCTTCTTGTTCTTAGACATGTAatgatgaatatatattatattattgctgtgtttatgttattatattaacTGTACTCCTTTGTTTCACCCTTGTTAAAATCAAATTCATATGCATACAACTTTCACTGCCATGCTGACTTGACGCTTGTTTTTCTTAAGACACACACGaaaagaagtatgacaaaacacctgaaaaggaattaaatgcattttattttatagctttGGGTGGAAAATTTACAGAGACAAACTTCTCTGGAAATGGGACATTATATTAAAGatctgcatttgtatttagttttgctAGTGAAGGGATTAGATTCATAGTTCACAATTTCAACAACCcagcattatttgtatttaaatacagctGCCCCCGGTTTGGTCACACTTTTCCACGATCTGGGTTTATGTAAACCAGTTAGATTGAGATCAATGTTGAGGTCCCACATTAATGCTGGAACTCGCTCACAAATCTGGCACCAGGTGCTCAATTACTCCCAGTCAAACCAATAAAAACTGCATCGTTCCTTTGTATCACCTGTAGAAgttgtgaaatatgaaaattgTGCATATGAATCTGTGCCGTTTGCTGCTTCTCTCTGTACTCTccaaaaactaataaaacaaatctaatctCTCCTGATCCTTCCTGAAAGACTTTTTTTCCTGCATATTAAAAGGAAGTCAAAGTAGCAATCGTTTAAGGATTTGACAGTTAAAACTTAGGAAAGTGGAAAGATTTTTCGGTATGTGGATGAAATCAAAGTAACActaacacaaacagacatgtaGAGGTGTGGAGTAGCAATAAGGGgtctggactcctgagcagagggtcggggttcaatcccaggtgggggacattgctgttgtacccttgagcaagggaaTGTACCCagactgctccagtaaaaacccagctgtataaatgggcaaTTGTAtgtaatgtgatgtattgtctgctaagaaatataatgtataaaagaGAAAGATAGGTGTGGATTAATAGCTTCCCAAGTACAACTATAGTACTATGTGGAATAGGAAGGAGgggattgatttttttttttttctttgagaacTGAACACAGCGAGTCAGTCAaaggtcatttaaaataatttatttgtatccaaACCTTTCAGTAAGAAACAGTGGATCTGATATGTACATTACCCACCCCAAtgtgtgaaaatattaaaattatatacatacaatttacaATCTTCACAAAattcaaagaaaagcaaaaatgaaagtattttaaCCTCCGCAATGAAACGACAGCGATGCTCTAAGACATCTTAGGATTTCTACCACCACAGTATACCTCAGTGGAGCGTCAGTCAGATCCTGGATGGCTACAGTCTAACTGGGGTTTTagagtgctttaaaaaaacgacaaaaaccaaaaccaaaaccaaaaatctGACTATCAGCTGTAAAAGacaaaagctgaaaatgttCAATAGAATGAGGGAGAGCTCCTGTTGGCACAAAAACCAGAATAGAAGACACTGTAGGAGCCCAGGACTGGAGCTGGGGTCCGACACCCCTGTAGTAAAATTGCCCAAGCTTCTATACTAGATAAACAGCACCGCTTTGCAAGGGCTCACACCCCTTCCAGACCCCAATTAACAGATTGCTTTCAATAATCAGATTTAAAGCAAATGCAATTATCTAAAGTGACTTAAATAGACTATAGACACCTGGCACAGGGATACTTCCAAGGTTCTCTAAATCTACACAGAAGGGCCTCAGTTCTACCTTCCAAAGCACAGAGAAGTGGAGTGACATGCATATGGGAACATATGGGCCCTTGTATTGAGCTGGGACAAAGTGCAATGGCAGGTCTCGAATTTCTCTTTGCTCGATCATGAGAAAATTAGACAAATTAGATTGTACTAGATTATAAGAAGGGCGTCTAGAGAGAATAGGATGTCCGTTTTCACCAGGTTGCTGCTTCAGGCTGTAAACATCAATGTGAAGCCAGTGAGCGAGTTGTAGATTCTTCTCCAGCATAGAGGAAATGTGCATATTCACCTGGCAAAGGGATATGGTCAACTCGGACTCTGAAGCCACCAGCGCTTTGCTTTGGCAAGGATGAAGTCAACTTTTGTCAGGTGCATCTTTCGAATACTTATAAACATAGCCTCTGTCAAGTTCAGATCTGTAGTTTACAAATAGAGGGTGAGATTTGATTTCAATTGGCAATTTatcttaaaagttaaaaaataataaatgccaatTGAGTTATCAAACACTAACACAGAGAGATGTagacagcacacacacatcctcaGAAATGTACAGGCAGGTCATGTGTGGGACTTGCAGTGTGAAGAAATCACAATAGTAGGAAATAGGATGACTGATTAAACCaatggggaaaaacacaaacaagaacaatGTAAACATGGGTAAAGCTTACCGACAAACACGTCTGTGGATCAAGCATGGCAGCCTGAGCTAAACTTGCATGATCTGAATGTGCAAagcaacaattaaaatacataatagtacaagtaataataataataataataatgaatgggGGATACATGCATAGTAGGCACATACATAAAATGATGGCTTTTGgttttcagcatttaaaaaatatgtatttgatgcGCCTTACCTTAAAATTGTATCCTTAAATATGTGCATCCAAATTATGAGAAAGGTGTTTAAATTGTGATTGAAAACAGTACACAGCAAGTAAACTGGCATGATAGAAGCTAAATCTTGCAAAGAGCAAGAATGTAAGGCAGTTAAAATAGGATCGGGAGGGAAAGGGTGATCAAGTAATGTGATTGATTAAAACTTCAAACTGGGGTGATGGAATTGAATTCAGACGCTCAATCAAGACAGacggattaaaaacaaaaaaaaagttgtttaaacatttatagcagcaagatttttttatatatatataaaaaaaggtaaaatcagcacagaatacatataaaaagacaaatgccAGAAACCAGAAATAATCCTAATCAGAGCACTCAACACTGCAAACACTATGTGgataaaactaaaccaaaacataagacaaaaataacagtaataaaaataaatgtatctcaACCTTGTAAACATTTCATATTCACCGACTGCATGCTAATTTCTTTCAGTTTGCACTTTGGTAATCCTTTACATTCACACCCAGTTCGGCTATCTTTAGACACTGAATACTTTAGGGCAGCAATACTCACTGGATATGGGCAGCTGGAGAATTATGCTTGTTCATGAGAATGTAAGAACCAGAACCACAGATAGATCAATTGCTTTCTTGGCATGGTATTAGAGAGTGGTCCTAAGCCCGGAAATCCTTATCCAGAATTAGCATTTTAAAGACGGTGAATTGAAAAGTTTTTCAATGAAATGCTGCAACACATGCAATTGATAAGTGATGCAGAAAGATGCCTTTACAATGTGTTGGTCACacaaaagggggaaaaaggtTGGGGTCCGTATAAATGCCAGCACCTTCTCCTAAACTTCGAGGGCCGAAAACGAGTTGCCAAAGCACATGAAAGAACTAATGCATCTCCCTGGCAATCGATGCTCGAGCTGATGATTCCTGAGTTGGGGCTTCAACTTGCCATGCCTAAACTAGTGGGGGGAACTTACCACTGCGACACAGGTGTCACACTTTTAGAATTCCCCATGACGTTTCTATCCACTTAGTGCCAGAAAGCTTCTCTCAAAATGGATATTGAATAATCTCTACCAGGAAGCTTAAACCTCGCTTCTGGGGGTTACCCCTGGGTCTCGTTTGAATTgcccattttaaattaagctgatacaaattatacatttgaaaaactggCCATTGACTTTCCTTAACTAAATTACACTCTTAAAACATGGATGGGGTTAGAAATACCCTCTACCAAGAGACTGCTTTCTGAATCATCAAGGTATATTGATTAAATAAGCAGACATGCTTATAATGGGGTTTTATATTGTGGGAATGAAGGATGGACGGAGTAGTTTTTCACTAATCTGAAGGACTTTTCAGGTTATAAATAGGCCTAATTAatacaatacttaaaataaGTCCAATAAATCAAGATCCATTCATGGGTTGAATACGTAACTCTATGCagagacaacaaaataaaaatctcaaaAGGATCCAGACAAAAGGAGATGCACCAGACCCCAGGCATGAGAAAACATGAAAGGCAAATGAACATTACTGTATACATTGCTCTGAAGCCCTGTGCTATCCAGCTTGTTTCCGGGCCGAATGCTAAAGATCCCATTCAGAATTGGCAAGACACTCTGATGCAGAAGGGTGCCACAGTAGATATGGAAAAAGGCCACTGGCAGAAAGTTTGGAATTGAGGAGTTGCCGCAACATCTGCAGTTATAAGATAGATAATAAAACAGGGTACTTAAATCAATAAGTAAAaatgactgtttttattttattttttccgtCTCCCCATTCAGGCGTTGCATCAgcaaaaatggttaaaaaaaaaatggtatctGGTTTTAATGTGGGGGCACAATTTTTGTACCTCAAAAACCAAAGCCTTTTTTCGGTTCCCTAGATCAgaggtgtcagactccagtcccaAAGGGGGCACAACAAATGAGATTTCAGCATCTGGACAGAAGTTTCAAATCATCCACTTAATCATTAGACCAATGAAGACAAGACGAGAGGTgggctgaaaaaaataaaaacaggagacattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63486 lncRNA upstream 214078 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 478428 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 512405 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 533880 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 556374 8246577 ~ 8246832 (+) True G50692
TU63641 lncRNA downstream 185145 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 382386 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 383139 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 383624 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 385013 9194404 ~ 9194638 (+) True G50932
AMCG00008684 mRNA upstream 18327 8780753 ~ 8784879 (+) True AMCG00008684
AMCG00008679 mRNA upstream 31358 8764331 ~ 8771848 (+) True AMCG00008679
AMCG00008676 mRNA upstream 75475 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008677 mRNA upstream 103425 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008675 mRNA upstream 109376 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008683 mRNA downstream 16656 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008685 mRNA downstream 56888 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008688 mRNA downstream 93823 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008696 mRNA downstream 307284 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008695 mRNA downstream 313850 9123241 ~ 9132238 (+) True AMCG00008695
TU63473 other upstream 136658 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 485604 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 863435 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 863435 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1785081 6957611 ~ 7018125 (+) True G50448
TU63666 other downstream 272436 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 307346 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 500695 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 500695 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 500695 9310086 ~ 9316151 (+) True AMCG00008710

Expression Profile