RNA id: TU63589


Basic Information

Item Value
RNA id TU63589
length 3212
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G50836
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8837359 ~ 8840655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAGCAAAGATTTAAGAAGATTAAGACTAAAGAGTCTGTTTGTCAGCAGAGGGCACAGGGGAACACAAAATACTGTATGCCATGCACAtgtaaaccataaaataaacttttattgaaaattaacaaaataaataatctactGTACAACATAATAAAATCAAGAGGTCATCTAATGCTTGCGAGCCGGAGGATTTAGGCAACTAAGGATGCACTGACAGGTCTAGCTCCCAAGGGGGCACTCTTGTGAGAATCTCCACACCTTTATAAAACTCAATCCCACAGGTCTGTCAAACTCCTGTCCTGTTGGACCTCCTTGCTTTCTCGACCTGATCTCTTTATGTTATCAAATCTATTGTTTACTATTTTCAGCCCATTCTGTCCTTCTGTTCCCAAAGCCAGTGAAGGTGTCACTCTTGCCTGTGTTTGTAGATACagtaatttgaatgtattgcagTCTCACTACTGGTGCTGGAGAGCCATGGTCCTGCAGCTTCAAATCGATACCTTCATCCTCAAGGGGTGGAGACCTTTTGGTTTTATATAAGTTAAACTGTTAGTTTTTCTCTTTGAGGATCTGCTCAAAGTACTTACCCACATTGAAGTCAATGCACCAGTTAAAGAATGAGATTTATATACTGACATTATTCAATTCTTAAAGAGCTCTCCTACAAATGGCTCCTGGACACACTGCTAATTGAAACCAATGGGCAGAATTAATAACATGCCTGACGTTTCAAGGTGGAATGAAATCTAGCAGGCTCTTCAGCTTTCTTTTGATGTTGTGTATTTAGAGACCACTGCATCAGCTCCAATCAGCATGTGATAATTTCCCCTCTACTTAGCTGCTCTAATTAAGTCTAATTTATCACTTCTCTCCAGGTGGCAACATTTTCTGGGGGTGCTGTACTGTATCTTGAGCCAAGGGCATATTTTAAGCTATcagctgatttttattttaatagaatttcaaaatattcagtaagctttgaaaaaaataattctgttaATTTAGTAACTGAGACACCGTGGCTCTCCAGGGCCAGAGCTTGACACCTTGATTGTGGTTCATTCCTTAAATGATGTCACTGAGTTGTCCTTTATGAGGGTGTTATTGTTTCTGGTGAGGGCTGTAGtactttaaatcaatatttgcagCCACATCATATTAGAGATAAGAGAAgcggaaaaaataaataaatcaaggatTGAAGTTGGACACAACCATTTTAGGTCACTCCCTCcacccccacaacacacacacatacacccccacacacacacacaaacatcccCTTTGTGGGCTAAAGACCTGTATCAGCCAAGTGGGCTAAAACTACTGTAGTCAACAGTTCAGACACAAAATGGGTTGCATAATTTCTACATCATACTACAAAAATCAAccgtgaaacacacacacacacacacacacacacacaaatagatacACTGTATAAATAACTGCAGGAATAGAGGAGGCAAACGCTACCCAAACTGCCACCATTGACCGCTCCTTGAGATAGCTTTTTGACTGATTGATCAGTGTACGACTGTGATTCCCAGATTTCTGGATTCTGACAGTGAGGACTCGATGGACGTACCGGGCAGGGAGAGCGGCTGGTCAACACAGCAGTGAAGTTACACCAGATTCCCCAAAGCCCGGAGGCTCTGAATACCATGTGTTCGGATGCTGGCCTGTTTGGGGAACCCAGCTCTTGCATTCCACCTATCTGTCTCTGCTGGGCTTCCCTCCTCTGTCCTTAATGCACGGAAAATCCAGGGAAACCCTCCCTTCCACAGTGATCAAAGTAGCTGATTCCTCTGTTGAAGCCCCACTTCACTGCTACAAAGTAGAGATGCATTTACAATATAGATTTTGTCTTGCACTTAAACAGTACATTACCTTGTTTTTTCCACACAGTGTCCAATGTTTTTTTGCAGCCACTGGGCATTACTACACTTCATCGATGATGCTATATGTTGTCACGGCAATCGTCTGTAAGGGTAGTACTGAATAGCAAAGGTCTGTCTCTCCCGTCTCTCCTCATCTCCCTTCCATCGCCGCAGTCTTCCCTTTTCGAGAATCCCAGTCACTTCCAGTCTCTGATTCCGGCTGTGGGATCAGACTCGAGCACCCCGAGAGCACCTTGTCCTCGGCTCTCCCCGAAACACGGAATAAACAAACCGACCGGCCGACCGACCAGATGAACGAACAAACGattgaaacaaaacacttaaaaaaaaaaaacaacaagaagaaaCGTTCTTGTTCTCCGCCCGGCTCACTAAAAACATCCTTCGTCCCATTCCTGTGAGTTCTGACTCGGGACGCAAGGAGAACGAAAAGATAgcaccaaaaaataaacaaaccaccaacaaccaaaaacagaaaatataagataaatcagaaaattaaaaataaaatcccctcccctcccccactttTAAAGTCTGGTCAAGGGCTGCAGTGTGGAGAGGATAAGGTAGGTTTTGGCTAAAACGGAGATAGGAACTTATTGCTGGTGGGGAAgggagtggaggaggaggaggaggaggaggaggggaatcGGAAGATGGagggtgtgtttttatttcccactGTGATCCGAGTCTTCTTTGGTGCTGCAGGAGCTGCTTCTTCGGCGCTGGGACGGGCCCCTGTCGCTCACCCTGTCGTCCAGCTCTGCAAAGAAACAGCCAGTGCAGGTGATTAGCCTAGAGGCAAAGGAAGACAGTGTGAGGCGAGGGGGGCAGATACACATACAAGCAAAGCAGTCTGGGGGGTTGCCGAAGGCCTGTGTGCAACAAATTAGTTCTGGATTGGAGgggtgtccgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgcatgttgTGTATGCCTCCTCATACACAGTCTTTAATCACACTGGTGCAGGCAAGATTTCAAATGAGCTACTGAGCAACCAAAGaactaaaacaatgtataagtgGATGTGTACATGCCTTATCCCATTAGAAATCTTTGCACCGTATGGCCTCTCTTAAAAGGGTAGTAGCAGTGTGACACAACGCCAGGCTCAAAAGGGAGCATGCCCTAACACAGTATCTGCCTTGAGTTTGTGTACCTTACAGGGCCTCTGATGTAGAAGGCAGATATTTAGACTAAGGAGTTGTTGAGATACTGGATAAGTGTACTGCATGTGCAAATGGGTAAGGCAGGTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63521 lncRNA downstream 263021 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 453352 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 453352 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 476397 8357450 ~ 8360962 (-) True G50736
TU63427 lncRNA downstream 512584 8278752 ~ 8324775 (-) True G50711
TU63686 lncRNA upstream 303689 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 535917 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 540096 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 547603 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 548169 9388824 ~ 9389048 (-) True G51005
AMCG00008687 mRNA downstream 17913 8805776 ~ 8819446 (-) True AMCG00008687
AMCG00008686 mRNA downstream 36035 8791263 ~ 8801324 (-) True AMCG00008686
AMCG00008680 mRNA downstream 80927 8730725 ~ 8756432 (-) True AMCG00008680
AMCG00008682 mRNA downstream 120033 8701778 ~ 8717326 (-) True AMCG00008682
AMCG00008681 mRNA downstream 178799 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008689 mRNA upstream 41839 8882494 ~ 8892523 (-) True AMCG00008689
AMCG00008693 mRNA upstream 56082 8896737 ~ 8901751 (-) True AMCG00008693
AMCG00008691 mRNA upstream 73283 8913938 ~ 8916096 (-) True AMCG00008691
AMCG00008690 mRNA upstream 100845 8941500 ~ 8941823 (-) True AMCG00008690
AMCG00008692 mRNA upstream 117623 8958278 ~ 8967884 (-) True AMCG00008692
TU63526 other downstream 177342 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 466029 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 543005 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 543005 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 562844 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 550188 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1732828 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1836608 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1836608 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1839623 10680278 ~ 10712485 (-) False G51241

Expression Profile