RNA id: TU63686


Basic Information

Item Value
RNA id TU63686
length 5595
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G50915
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9144344 ~ 9149938 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGACCCACATACAGCCACACACAGCGTCAGCACCGCCCCTACTGGAGACCTGATCTTTCCTAGTCCATTGACAACTTCTGCTTGCGAGTGAAACTAAATGTCTCACCAGGCCCGGTACCGTTACTGATCTTCCAGTCTCGTCTCCCGTATCGGCACATCCTGCTTGTTAATTTATTGTCTCCCGTTGCCTTCGGCCGCATCAATGCAGGGCGGGCTGGACCAAAGACTTGGAGGAGACGGTCTTTCACAGCCAGGTCCGCAGGTGTTGGCTTTTCTTCCGATCAGGAGGACGAAAGCACAAAAAAGGGCTGTTTTTAATGCATGCCTTTCTGCCCCACTTCAttacccccaaaaaaacaacttaaatgaCTGCCACTTAATCCAGAATTACATCCCAACCAAGTACTGCGAAGCACTTTAGATGGCTCAGCGCACCTATCAAAAGGCAACTGCTGAAATGTACTGCCAATCTCACTGTGCCATACAGTGCCAGTAGCAAATTCACACCCTGTGGTGATCTCCCAAAATGgattcaaatacaatacaatgcactataaaaaaacaacaacaaaaaccccAATACAGGGAAGATCACTTTCGTAATTCTGTATCGAAATTTGAACATTTGGTCATGTGATCAAGGTCTTCCCTTCACCTCTCGCAAGCAAAGCAACTGTCTAGGAAAATATCTGGTTTCTCCAGGACTCGGCCTCAAAAGTACCTTCTAGTTCTGCAAAACCATCGTTCTCCTGTATCTCATAGTAGGTGGCCAGTTAGCTAGTTAGAGGCCGATGTTAAACTGTCAGGCGGGAAAGGATCATTTACACCTGGTCAGAAACTTCTGCACACATCATTGTACATCTGGACTCTTCCAGAGAGCACAGCTGGTCCACAGAAACGGCTGGCTGTGGTGCCCTTCTCCTGGAAATAAGTGTTCCTGCTACCTCCCAGGTACTACACAGACAATAGCATTACAATGTAGAGCAACACGGTGGGCAGCTTTTGATGGCCCCTTATTGGGTGAGCTATGGAGAACAGTAGCTCAGAGAGCATTAGTAGTGGCTGGTAGTTATGGGTTTGACTGTACACCAAagggagggtggggtggggttagGAGtgtgcagaaaaacacacaaaagcttCCCAGTTCTCTAGACTGCAAGAACAATACTGATCACAGTGAAAGCACGGGTTCTGTACGGGTTTTatgtagtgtggtgtagtgaCTGgggtagttttttgtttttgtgatattttttaattttaaaattcatatttcatatgagtttttatttgtattatcttaCTCGGAGCACTCCAGTTCTAAAGGGACATCCATTAGAcacctgaaaaataataatagtgaaccAATTTGCCCATTTTGTGCACCTACTGAATTCGAGCAACAGACCATAGCCAGCCAGTCCGAAGAGATTGACTGACTGTACAGACTGTTCACTTTCCACTGCAAGCTATAAGGtttgagacacacacacacacacacacacattgcccGACCCCCCCCCCTTCGAGCTTTCTACATTACACCAATTTCAAATGCCTTAAAACAGAAGTGGATTGAGCCGTAGTAAGagtattcaatttatttttttttctgcacactCCTTAACAGAATGAGGGTTGGGGTTTGGTGGAGAAGAAAGGGGTGCTTACTGTTCTTTACTGAAGAAGTTTTCAGTCAAGTGCGTCGCAGATATATAcgtaaatttaaaaaatgatgggATAACCTAAATCGCAGTGTCCCCCTTCCTCCACTTTTCGCGGCGTGCCAAAATCTCAAATCCTCTGTAAGCGATCACCCCATTCTTCcattccccccctccctctttctttttttttttttttgattgatgATCGTTAACTTTTTAAAAGAGAACAATGCtagtaattttgtttattttaaatgtgcaacaTGAACTTGAAATACTAAATCCAATTAAAACCACACAGACGCAGGCGTGCGCGCGCACACACAATGCAGGACCCTGACATTTCCAGAATTTAATAGACATTTGCAAAGCCCGGCAAAGAAATgtccttttaatatatttatattctatatatatttatgctgTTCTTATTTTCATTCTCCAATTTGTGGTTTCTTTTGGGCCACTTGTATTGAACATGAATGGTTATTAAAGGtctatttaaaagaaatgggGACAAAACAAATTAGAATGTGACTTAGACTCCATTAGACCATGGTTATGTGAAGTTATGGACAGAATTTGCACAAAGAAATATTGGGAATACAGGTTTTTCATGTCTGAAAGAAGAATCAGACATTTTCCTGCAGCTACTAAAGACATTTGATGCCTTTATTCAGATTCTATAATCACTTGAGCTGATGCCATtatggtttagttttttctttatatttagtttttctgcaaCTTATTCCACAATTGTCGAGAGCAATAGACAGAGCTAGCCTTCGAATTCTTAAGTGTTACTTTTTCTGTTAcggtaccttttttttttttttttttcttcaaaattaatttgcactttgttttaatttttaatttttttaggaCAGGGCGGGTGTCAGTTGTAGTCGaataatttaaatcttaaaagtATTGTCTGACGTGtagtaaatgtttattaaactgGAATATGctgtttactgtttttaaaatgaccaaaggttatttgttattattactgctattattatgattgactgctattttattttatttaattagtagtaGCCTACTTTACTTTAATCTGAACTTGTTTTAGAAATACCAGACAGCCATACTGGACGTTTATTATGATCATTGGCCTTAGTTAAATTATCAAGTGGTACAAATACAGCGCAAATTAAAATTGAGTCTGGGGTACTTACAGTACTTTTGTATATCTTCCGTTTCACTTTATAGTgataaaacactttttcttaTCCGTACCTCTGAATATAGTTTGCATTGGGCACGTGTCTGTAGAATCAAGAGAAACCACCGATTTCAAAACGGATGTACGTTTCCTATGTCTGTTTTAAGGATGGTACTTGAGACCGACTGtttgcagaaaagaaaatggtcaTTGTAAAGCTTAGAAAATTGTACACTTAACAGTTTTTCATTACTTAGGATACAACACACAATAGTAAAGGTGCTGTGTTGAGAGAATCATGGTCCAGTCACTTCctctactgtatttttattattattttgcttaataTCATGATAGGACAGGGAAGAAATCTTGTATGTCTTTCCTCATGGCCGAGAGGTGGTGTTTGTGGTTATGCACTGCGTTTATGTCCAACTGGACCATGGTCTGACTGCGGACTGAACTGATTTCGCTGGGATTGTGTGCTTGATtggggtgtgtttgtgtttaatattatgtttcagTGTTAGGgtatcagtgtttttttttttttttttcttctttgtgtgtgtgttttaatgcgATGCTATTGAAGTGCGGGTTCTTCTTGAAGACATGGTTTTGTAATTGGAAATTCCGGCAAGCTTTCCTATAGTGTGACTCGCAGCCTATGCAATCTAGCAACTGTCGATCTGGAGCACAGGGTCCAccaagcagttttttttttttttttttttttttgctatgtCGGATTCCCATCCAGCCATTttgttacattcaaataaaaaaattccaAACCTTTGTGACCTCACACGGCTGAACAGCAGTGTGGCGTAAGCTACAACACTCCATTaaagttctttttttatttctttgaaatGTCTCGTCTTGTTCTGCCTCCCTAAGCGAGGTCAGTATACGTCAGTCAATCGTACGACAAACACGGATGTTTACAATGCGAACTCAGGATCATGTGTATTTCAACTTCCTCCATTTCCTTCCCCCTTTTTCTGCCGAATAGCAAGGATTTTGAAGCGATACAAAttgaaagaatatatatatatatattattttttttgcttacaGTATTTGCTTACAGACTTCTATGTGTTTCGTTCGTATACGACGTCTTGACTCGACCTCTTGGTTAAGCTGGAGTTCTCTATATGTATCCTTATCTATTCTCTTGATCGCCTTATTTTAGCCTTACTTCTCTAATGGAGAGcaaactcacacacagaaaaatatttttgtatatgtggCGTGCCTAGAACAAGGGGTTTCATTACCCATTGCAAATAGTTTCTCAACGCTCCGGATCATTATAAAACCCACAACACACTCGAGTCCAAGGCAGCTTGGACGATTTCATGATTTCAATGAACCTACACTTTTTTTCCTACATATGtttaagctttaaaaaatgaaaacggcGACCTTACTTTATGCAACTGTAGCTAAGCTGTCTACTTAAAAGTTGCTAAACCGCGTCGCTGTAGAGCAATATAAAAAGTGCCGATCAGCGGGCAACCCAAAGTTTCCACAAGATCTTCTTTATTGTTCTCCCCTTTCCTGACTCTTCCTAAATAATGGACTCTTCTGTTTAATCGTCTGCGTGTCTTTAACCTTTGGACTAGTCTTCCAGTCTCCTCTTTGGTTTTGATTGACACCTCTCTTAACAGTCGTGGTAGTACTGCGGCCTAAGACCCTGCCTGGCTGAAAATAATTGCCCTGTGTTTAGAAAGCTCCAAGGAACAATAGTCAGACAGCTTTGCTTTACCTCACTGAAATCCGTGCAAAAAGCTACAAACCAATCTCTTCCTTTTGAAGCTCAATACCAAGAGATTGCCCGAATGAAAACCCATCTCTTGATGTAGGTTGCTCGCCAAACTTGAAAATTGATCGTAGGTGGCAACAAATATCCgaacattaaaacagaaaaaataaaattcatagAGAGATGTATTTGACATGTTTTTGGTGCTatgaaatttgttttattaactatATTGCTATGGCACCTCACATTAAgtagtttttatatttaaattaattgtaagcTTGACTTGGACATCTCTCcagaggagaaaataaagaactgAAAATTGACATGGTGAAggattttatttggtttttacttgaaatatttaatttgtcatctTTTTACTGTCTGTGCTTGTCTGAGTGGGTGAGTGTGTCTTGCTTGTTTGTGAAGGCCAGTATCAGCTAACGGGGAATTGCAAAACGGCAGTCTAAAATAGTCCAGGAGTTTATCAAAGGActatcttttttaattttattttattttggtccGTTGTATATTTTAGGAATGATCTATATCTGTACAGAATTTCCCTGACTCTAGAACGGGTACATTGTAATTACAAATTAAGTATTAAGGGAGTGTTTGCAGACAATGTGAAACTCCCAAAACTTTCTTAGTGGTTGTAAATCAGTGGCACTTACTGAAGTAAATCTGGTCAATACAGACTTGTTAACATGCCGCTATAACTCAGCAATACACCTGCAAAGGATGCTTGATTTATTACTACTGGATTTTTCTTTGCCTTCCTGTTTCAGGATTgcattttaatctgaaaatgtgtggtggtttgttttgtttttataatactaCAAATGTTCATGTATCTGAAGGTCACACTAATAACTAAAAGTAGGCTACTGTTGGTTTTGATGAAAACCAAACCAGGATCCCTGTCTCGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63589 lncRNA downstream 303689 8837359 ~ 8840655 (-) True G50836
TU63521 lncRNA downstream 570006 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 760337 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 760337 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 783382 8357450 ~ 8360962 (-) True G50736
TU63785 lncRNA upstream 226634 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 230813 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 238320 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 238886 9388824 ~ 9389048 (-) True G51005
TU63792 lncRNA upstream 239273 9389211 ~ 9389570 (-) True G51006
AMCG00008697 mRNA downstream 41464 9081827 ~ 9102880 (-) True AMCG00008697
AMCG00008699 mRNA downstream 76914 9036933 ~ 9067430 (-) True AMCG00008699
AMCG00008694 mRNA downstream 108401 9019960 ~ 9035943 (-) True AMCG00008694
AMCG00008692 mRNA downstream 176460 8958278 ~ 8967884 (-) True AMCG00008692
AMCG00008690 mRNA downstream 202521 8941500 ~ 8941823 (-) True AMCG00008690
AMCG00008698 mRNA upstream 122 9150060 ~ 9170282 (-) True AMCG00008698
AMCG00008705 mRNA upstream 47495 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008702 mRNA upstream 73176 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008704 mRNA upstream 82188 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008703 mRNA upstream 133612 9283550 ~ 9287687 (-) True AMCG00008703
TU63526 other downstream 484327 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 773014 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 849990 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 849990 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 869829 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 240905 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1423545 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1527325 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1527325 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1530340 10680278 ~ 10712485 (-) False G51241

Expression Profile