RNA id: TU63704


Basic Information

Item Value
RNA id TU63704
length 390
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G50930
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9192530 ~ 9192919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggtggtgtggggggggaggggggtggtgcTGTGACACACTGCCAGGACGTGGacgtggagaaaaaaaaagcatgggGACAGGGACAGGTGAAACTGGAGCACTACACAGGCATCTGGGACAGTGAATTCTgaaagagggggggagagagagaggtcctGAAATAGAACAGACCCCATCTCAGCTCCTGTCACACTCGCAGTTCTCTCAGTGCACCGATACagacatttgtatgtttttcccGTCCCACCTCTGTCCAGTGCTCACCTGGGCCCATAATACCCCATCATCATCAGTGTACAGATGTAAAATGTACCCTTTGACTCTCAGCAGGACTTAAAGTTAAGAGGTCAGTAGCTCTGGCACGTGGTGGGGGCCACAGCACTACAC

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63703 lncRNA upstream 153 9191777 ~ 9192377 (+) True G50929
TU63641 lncRNA upstream 197627 8994536 ~ 8994903 (+) True G50878
TU63573 lncRNA upstream 383139 8803206 ~ 8809391 (+) True G50823
TU63486 lncRNA upstream 603402 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 867752 8278853 ~ 8324778 (+) False AMCG00008664
TU63705 lncRNA downstream 96 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 1485 9194404 ~ 9194638 (+) True G50932
TU63764 lncRNA downstream 160059 9352978 ~ 9354405 (+) True G50983
TU63777 lncRNA downstream 176213 9369132 ~ 9379579 (+) True AMCG00008707
TU63786 lncRNA downstream 199108 9392027 ~ 9398369 (+) True G51000
AMCG00008701 mRNA upstream 8000 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008695 mRNA upstream 60292 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008696 mRNA upstream 70863 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008688 mRNA upstream 279188 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008685 mRNA upstream 311362 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008700 mRNA downstream 77443 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008706 mRNA downstream 97769 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008710 mRNA downstream 120308 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008708 mRNA downstream 145912 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008707 mRNA downstream 162173 9355092 ~ 9377055 (+) False AMCG00008707
TU63657 other upstream 69718 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 104563 9081827 ~ 9087967 (+) True G50900
TU63473 other upstream 525982 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 874928 8313425 ~ 8317602 (+) True AMCG00008664
TU63268 other upstream 1252759 7933829 ~ 7939771 (+) False G50583
TU63743 other downstream 117167 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 117167 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 117167 9310086 ~ 9316151 (+) True AMCG00008710
TU63913 other downstream 736559 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 736559 9929478 ~ 9931081 (+) False AMCG00008727

Expression Profile