RNA id: TU63764


Basic Information

Item Value
RNA id TU63764
length 1428
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G50983
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9352978 ~ 9354405 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGACTCAGCTGGAGGTGATTTTATGGACTGAAATcgtatttaatttcattttttttggttgtttttgttaactTGTGTTAGCTTTTAAAACGAACAAGGCAAACATCATGCTGGCCACAGGAagaatatataagaaaatacacacatacactttggATAtgttccaaaatatatatagcaatcCAGAATCCTGGTTTGTGTTGATATTGGTTTTTGCTGCTTTTTTAGAAACACAGAAGGCCATATTTACAAAGCACAGGCCTTCATGCATACTTCCtcccaataaaaaaagaaaacaaacacagagtagTGTCCAATAAACTTTTATGAGACTTATTTAAGAGCCCtgattatcttattttattttccccctcccTTTATGAGTAAGCGTGGGGAAGTTTCAAAAGTGGGaggaaagtattttattaatgtggcCAAGGGAGTAGGTTGGGGTTTAGAATATAAAGCTCTTATTCAGATACTTTCCAGTAGCTCCAGGACTCTTAAAGAGGAATTCAATTAAAAGACCTGTTACCAGAGTAACTCAGCGTTCACAAATTAGAGCAGTTGGAGCTCTCTTAACTCGGCTACTTTCTCCTCCTGAAATAAACTGTGTATTACATTTGACCCACAGGTTTAAATCCCAGGAGGTTGGTGTTGTGTAGAATAGTGGCATGAGGACTTGGTGCTAGAAACAATACACACCCTCTGTTGATGTTGCAagcttaattatatatacagattgaCAGCATTTAATGCCTTAAAGAGACAATTACACCACATTTCCTTCTGTTAGTTTCTGAACAGTGTGCATGTCATCCCAGCCATCCTAATGTTATTTAACATCCTAAGtaaggacatttattttaaatggtaaaatgtttaaagtaacTTGTTTTGTGTGCTTCAGAATAGAGGTCTGGATTGCACATTACAATTAAGATACACTCACCAACTCTTAACTCAATAGTTAAAAGAGTTGGCACTTACACTGAGGTGTAGACTGGTATAACCGTTAGGATcctgttaattaatttacaattgtAGTTCAGGACAGGACCAATgcagtgtgttggtgtgtgtgagagataaGACTACCCTTTTTTCCTTTATAGTGTAGTGGTTTCTTGACAGGTTGCAATGCCTGTACAGAATGCATTCTTTTGGAGTGACAGTTTATCCTGTTGTAAACAAGcaagcagacaaacacacacacaaacagacagctttatatataaaactaattatatttattttattaatgttatataatatttttaaaggttcTAGTTGCTCCCTGTTTGGGTACACATTggttatgtaaaaaataaaaatatgaattaataaataataattaataacatgcatacatatatacatacatacatagatacctGTGTCAGGTTAAAGATGTATCCTATAATGT

Function

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63706 lncRNA upstream 158340 9194404 ~ 9194638 (+) True G50932
TU63705 lncRNA upstream 159293 9193015 ~ 9193685 (+) True G50931
TU63704 lncRNA upstream 160059 9192530 ~ 9192919 (+) True G50930
TU63703 lncRNA upstream 160601 9191777 ~ 9192377 (+) True G50929
TU63641 lncRNA upstream 358075 8994536 ~ 8994903 (+) True G50878
TU63777 lncRNA downstream 14727 9369132 ~ 9379579 (+) True AMCG00008707
TU63786 lncRNA downstream 37622 9392027 ~ 9398369 (+) True G51000
TU63867 lncRNA downstream 286351 9640756 ~ 9715167 (+) True G51065
TU63900 lncRNA downstream 437733 9792138 ~ 9794219 (+) True G51094
TU63911 lncRNA downstream 561089 9915494 ~ 9937752 (+) False AMCG00008725
AMCG00008708 mRNA upstream 2461 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008710 mRNA upstream 37672 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008706 mRNA upstream 43379 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008700 mRNA upstream 70371 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008701 mRNA upstream 168448 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008707 mRNA downstream 687 9355092 ~ 9377055 (+) False AMCG00008707
AMCG00008712 mRNA downstream 35006 9389411 ~ 9391756 (+) True AMCG00008712
AMCG00008711 mRNA downstream 46081 9400486 ~ 9408758 (+) True AMCG00008711
AMCG00008715 mRNA downstream 134090 9488495 ~ 9525687 (+) True AMCG00008715
AMCG00008716 mRNA downstream 173493 9527898 ~ 9529672 (+) True AMCG00008716
TU63743 other upstream 36827 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other upstream 36827 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other upstream 36827 9310086 ~ 9316151 (+) True AMCG00008710
TU63657 other upstream 230166 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 265011 9081827 ~ 9087967 (+) True G50900
TU63913 other downstream 575073 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 575073 9929478 ~ 9931081 (+) False AMCG00008727
TU64057 other downstream 1351073 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1630485 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 2105958 11460363 ~ 11465488 (+) True G51445

Expression Profile