RNA id: TU63785


Basic Information

Item Value
RNA id TU63785
length 2861
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G50999
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9376572 ~ 9379452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttTCTTACGGAATTTATTTCACTGCCCCAGTGAATACAGTTtccaatattacattaaaaaaaatggacaaaGTAAAAATACTTATACCAAATACATGCCCCCATCCTCCATTTCAGaaccaaatgaaaacattacacaagacagaaaatataaacattgaaTACAcactagattaaaaaaaaaaaaaaagtttacagaaataaaattcaaCGGGAAACCAATGAACTTGAGTTATTGGAAGGTCACCAGTATGAAGACAGATGCTCAGTTGTACCTCTCTCACTCTACCATATGAAATTACTAAATTAGgtcagcaagagagagagagagagaaagaaagaataaaacattgaaactcATGATACTGTAGCAGGCCTACATATATAGAATAAAGATGGTCTAAAATGTACCTCATTTAcctattacattaaattaccaGGAACAACCCAAGGTGAAAGTATCTGGCTAATATGCCCCCTCACATAGCTTTAGGGCATTGGGGAGGGCCAAAGCTATATTCAAGGACAGTATAACTTTCAGGCTTTTGCTCCATCTGTACTCTAAATGAATTAATCCAACTAATTTGCTTAATTGGTAATATTTACCATAACTATACACATGAGGGTATGGGATGAAAGAGTCCAGTCACACCAGAGGTCTCTGCCTGGGTCCACACTGGAATACTACTAACCTCTAGTGTATGTAAAGCAGTGTAGTGTCTTGCCCCAAGAGTCATTACTGGTACAATTATGACAGTGGTGATTTTGTCTATTCCAAAAGCGGTGTGGTGGGCTAGTGTGGGGCTCTGCAGGGCCACTACTAGGAGCCAAACTCGACTGACCCCCACTGTCATTTGCACAGCGTCTCCGTGGCTGGGGTGGAGGGGAAGCATTCTGTCACGCATGCCCACCCTTCGACTTCGACGCCCTCACTGGGGCTAGTTCAGACCGCGCCCTCGCTGCATCATTATTCACCGACTAACAGGTCTTATATTCAGGATCTATAAGCCTCTGCTTAAGGCGATGCTGGAAGGGCCTCCAAAATGGAGGAAGAATGGCCGACATTTGTCATGTGCATGGGATATGTTCTGTATCCTCAGTGTGCATCCAGACACAAGATTAAGTGGAAGTGAATTACAAAGCCCCCGATTTATTGCACGTTAGACCAATCATGGCATCGTAATGGAAATGCTACAGTGCCGAGTTCCTAAACGGCCACATTACAGCGCAATAAAGACCGCTGCTGTACTGAAGACCACAAGATTATTCTCAAAGACCTTGATAAAAAGAATAGCCAGAACCCCCAGGAAACCATAATTCTTCGCAAAACCCTTACGCACTGAGCTTATCTCGTGCCCGTTACAGGTTTTACTGGGGTTGCAACTTGTCAGCATGCAAACATATTTACACTTGCACgtgcaaacaaattaaaaaagatctaaaaaaaataaaacttttcaGAACAGATGCAAAGGCTCCGATTATTAACAGTTGCTGAAATGGTGAAGTACAAGGTTTGCAACATGTACCTACAACTGCTTACTAGGCAGTCTCAACTGATCTCAAGTACAGATCTGGACCAATCCAGGTTAGAGCAGTTGAGgtttcattacacacacaaaaatgaaaacgtACTAGAATCGTAAAAAACcttcagaaacacacatacaaggGTACAAGGGGAAGTAGAAGGGAGGAGGGTAAGGGGAGTTTGGGggaatattaataaatatttgtctttttttttttttttttttttttccttcacccTTACGATGCAAGCTGTGTCAGGAATACAGAGCACCGTTATCAGCCTGGTAGAGAACACCATCAATCACATCAATAGTGCATGTGCATGGACGTCTGTATGGCGTCTTGTACAAACTCCCATGATCCTCAGAGTGCTTCACGATTCATGAGCGCGAGGATCGGCAGCTTATCTCGGAAGCGCCAGTGTTCGGGAGTTTAAGCCCCAGGGTTTTCTCGCACATAAATCCATCTCCCGTGCAGACAGCTGTGTCGACacggaaaacaaaaagcaagctgTAATTAAGGGCTTTTGATGAGCACGTCGCTTACAGATGAAGGCTCTTTCCCTTCTTCCCAATCACGACAGCGCTAACGTGTCTAAACATGCAGACTGTTGCTATGCTACACGGCACCGACGcttacaaaatgtacaagaaaATGACCACGAGGCGCAGTTCCTTCGAGGGTTTGCAGAGGCCATCTCCGGTGGCTTGGCTGAGGAGAGCAGCGGTCAGTGACGGCCACACTTCATGGCTTAACCTCCATCCATTTCAAAACGGGCTCCACTAAACCAATGGCATTGTCCCACACAGATTTTCATCCATTGGCTTGTGAAATATCTGGATGGAGTTCGGTAGCACTGACAGCACTGTCCACAGGGGTGGGGAcaggacattaaaaaaaaaaaaaaaaaaaaaaacaagatgggCAATTAATGCCAGTGCTGGCGTTGGCACATCGAACTACAGCAGGACTAGGCGATGGAAGGTGAAGCTAAGGATCCTGCTTGCAAAACATCTGGGACAGGGACAGTGAAGGGCAATCCCTTTGAATCCAAGGAGAAGAAGGTGAGAAGGtaaaatgaatatgtatatatacacacacacagatatatatatacatatatataaaataaaatgaagtgagGCCTCTTCACTCTCAAAGCCCCTGTGCCATCCTTTCAGCAGTTCAAAGCCAAGCTCCGCAAGGCAGTTGGATGGTCTTCTGTACAAAAACGTGACCTCCATGAATTGGTTATGGGCCAGAAGAGTTGACCAGATCCAGCACAACCCCCTCAAATGTCTTCATTTCAAGATGATGTGGTAGCCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63686 lncRNA downstream 226634 9144344 ~ 9149938 (-) True G50915
TU63589 lncRNA downstream 535917 8837359 ~ 8840655 (-) True G50836
TU63521 lncRNA downstream 802234 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 992565 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 992565 8379837 ~ 8384007 (-) True G50740
TU63788 lncRNA upstream 1299 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 8806 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 9372 9388824 ~ 9389048 (-) True G51005
TU63792 lncRNA upstream 9759 9389211 ~ 9389570 (-) True G51006
TU63793 lncRNA upstream 10332 9389784 ~ 9390161 (-) True G51007
AMCG00008709 mRNA downstream 49853 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008703 mRNA downstream 88885 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008704 mRNA downstream 120918 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008702 mRNA downstream 147113 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008705 mRNA downstream 171180 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008713 mRNA upstream 34246 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008717 mRNA upstream 152381 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008719 mRNA upstream 183448 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008718 mRNA upstream 199937 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008723 mRNA upstream 360832 9740284 ~ 9757947 (-) True AMCG00008723
TU63526 other downstream 716555 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1005242 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1082218 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 1082218 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 1102057 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 11391 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1194031 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1297811 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1297811 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1300826 10680278 ~ 10712485 (-) False G51241

Expression Profile