RNA id: TU63794



Basic Information


Item Value
RNA id TU63794
length 2385
RNA type TUCP
GC content 0.48
exon number 1
gene id G51008
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9390843 ~ 9393227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCTCCTTCCTCCAATATTTACTTCAAGTAGAGCATGTACTCCATCTAGtgtttaataattgtaacagaaacatatttgatttaaaaaaaacgtaTGACACAGTAATGTAGTTATGTGATTACTAGTTTATCACATACAGAGTTCAGTCATATTAAACTGAGACCtactaaaaaaaactacattatcatccctttttttgttttgttttgttttgcaggactgtgtgtgtattaggCCCAGTATAAAGTACAATGCCAAAGTATTGGAATTGAAGATGTTTGCGATGCTCTGTGGTTTATCGTAATTGTGTCCAAGGTGCAGGTTTTAAAAGCACTGGGCTTTGTAGTTTACAGCAGAGTACTGTTTTTACACtggcaaacatttaaaacaaaaaggattcGTATTGGCcctttttaaagcaaataaactgGTTGTGCTAAACAGTCAGATTAATGTGTGTCAAGGTAGAGGGCAGTTGTGTGAAATGGGTCATAAAATAGTTCACTACTAAAATGGAACAGTGTGTGTGGTTCCCTGTCAAAGCTGTAGTAAATATTGGAGgatttttttacattgcatGTTGATTGTATGTTATTATGAAGTACCTTCTTCATAATAACATACAATCAACCAGATTGCTGGATCGGTCAGTTTGCTCTTGTAGATGTGACCCTCCTCCGATCTGAAAACGGAGTACTAAGCACCCTCTTCCCGTCTCTGCCAACACTAAAACCTTTATGACACATATCCATCCTTCCCGACTCAAAAATAGTCCCAGAACTCCCAGTGGACATTCTAATCAGAGCCAGTGTAACTGAGCCAGGACTGACCCAACTGTGCCTGGTGAAAGGAGGTGTGCTTATAGGAAGATTTCATTCCACTTAAGACACTGTAAACAGCTTTACACATTATAGGTGGATAATATGCAAAGCAGTAGAAAAACTGTAGACTCACAAAAACGTAGAGACCGCTCGTCTCTTGATTTCGTGTTCTAAGTGAAAAGCGCTGAGGGGGACGgagaatgttattattattattattattattattattattattactagcaTTAGTGTTAGTATGTGCACAGCTTTGGCACTGCCAGGCCCTGGTGCCATTCAAGCACTTGATGAGGTATTAACACACTGGGATGACAATGTCCAGCCCCGTCCACACGCCTCAATGTGCATCCATTTCCTTATTCATCCAACACGACAACAGAACCACTGGGAGACCGAACCATAGAAACCTCTGAAGATGTTACTTCTTTATCTCTGTAATTGCAACACTAAgtagattttttctttcttcatcttatatatattttttaaatgtgcgtATTTCTGGATAAAACCcacctacatttatttattattaatcattattattatttatcattattattataccattaATAATAGGCAACAAGCTTTTTGTAGGCTATTGTGCAAAACATCCGCAAAAAGTGAGAAGCTAAGCGTCCGAGGGCGGTGGGGCGCTCTCCCCTTCGAAGGCAAAGTGAGCCCCCTCGGGGGGCAGCCCCTCGGGACTTTGGGAGGGCCCCTCGAGGTGCCCGCTGTCGCCTTCAAGGCAGTTTTCAGAGACGGGCAGGACCAAGGTCTCCCCGGTCTCGTCCAAACCCCGGGGGCAGGGCTCCACCAGCTTGGCATCTCCTCCGCTGACCCCCCCGTTCCCATCTCCCTCCATCACACCACAGTCCTTGTACCCATTGGTCATCTCCTCCCCCAGTGCCCCATGAAGGCCCATGGATGCCGTCTCCATGGGGTCTATCTGATAGTAAACCAGAGAGGAGTCCTTCAGGAAGGCCTGGTGGTGGGGGCCCACCTGGTTCTCTGTGAAGCACAGGACGGAGGCGCCGGGGGGGAAGTCCCCCTGCACAATCACGGGCTCGGCCTCCTCCGGCGCCCCATCCATGCCTTCCTGGGATGGCATAAGGGGTTCAGGGAGCAGGCACATGCCCAGGGTGGCACCACTGTCTACCCCCTGCCCCTCCTCTTGCTCCCGCCGGCGCTCCTGTTCCTCGGCACTCTGCAGGTGCAGGACAGCCGCCTCATTCTCCCGGTCCAGGCTGTCCCGCTGGGCTTGGTACTCAGCCTCGCTCTGCTCAAGGCCTGGCTGGGTTTGTGCCGTGGCGTCCGGGTCCAGGGGGGCCGGGAGGGCGGCCTGGGTGGGCTCAGGAGAGGCCGGGTGCAGAGGCACGGCCAATTCAGGACCCTCGCAGCCACCCATCTGCCTCTTCTTCTCCAGGTCCAGCTTCATGATGGTGTGCAGGTAGTGGGTGCGAACCCGCAGGGGGTTGAACTCGATGCGTCCCGCCACATTCCCACAGCCATCCCGCGAGCAGCCGCAGGGGAACGACATCCGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63793 lncRNA downstream 682 9389784 ~ 9390161 (-) True G51007
TU63792 lncRNA downstream 1273 9389211 ~ 9389570 (-) True G51006
TU63791 lncRNA downstream 1795 9388824 ~ 9389048 (-) True G51005
TU63790 lncRNA downstream 2235 9388258 ~ 9388608 (-) True G51004
TU63788 lncRNA downstream 9089 9380751 ~ 9381754 (-) True G51002
TU63804 lncRNA upstream 16532 9409759 ~ 9410974 (-) True G51015
TU63838 lncRNA upstream 128127 9521354 ~ 9525687 (-) True G51044
TU63852 lncRNA upstream 184041 9577268 ~ 9578383 (-) True G51057
TU63883 lncRNA upstream 345419 9738646 ~ 9739256 (-) True G51081
TU63909 lncRNA upstream 516384 9909611 ~ 9910800 (-) True G51103
AMCG00008709 mRNA downstream 64124 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008703 mRNA downstream 103156 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008704 mRNA downstream 135189 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008702 mRNA downstream 161384 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008705 mRNA downstream 185451 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008713 mRNA upstream 20471 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008717 mRNA upstream 138606 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008719 mRNA upstream 169673 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008718 mRNA upstream 186162 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008723 mRNA upstream 347057 9740284 ~ 9757947 (-) True AMCG00008723
TU63526 other downstream 730826 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1019513 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1096489 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 1096489 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 1116328 8270324 ~ 8274515 (-) True G50712
TU64089 other upstream 1180256 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1284036 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1284036 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1287051 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 1287051 10680278 ~ 10682873 (-) True G51241

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU939423 True 6348 lncRNA 0.42 3 NC_048573.1 60086092 ~ 60092582 (-)