RNA id: TU63804


Basic Information

Item Value
RNA id TU63804
length 1216
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G51015
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9409759 ~ 9410974 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaGACTGAAGTGTTCATTGAAACCAGCTGTAGTATCAGTAGTAGCAGTGCCAGTGAGGGTCAGAAAGGTAGGAGGTGGGGATTATTGTTTAGAGCGacacagttaaaacagaaaGAGTACAACAAATCCAAATACATGCTTTAGTAATAAAGTAAAGTGGAACTTTGTAACAAGCTTCAGTTGCAATTACATTGACTTAATTGTTCTTACAGTTTGTAGTACAATGCATTATGCAAAccatttttaatgacttttttcCCATGATCAGAAAACAGAGACAAGTTTAATTGTGCCAAAAGATCGACTGGCAAGAGATTAATATATAAGAAAGGGTCCCACTCCAGCAGTGTTATATACCCTTATAGAACCCCAAGCGaagatgttttaacagtaactggTATCAGAAATACCAGTACTTAGAATACTACAAAAACAGTGGAGCaatacattaaagtacacttatatttaaatctataaattAAATACCAGCTATTTGTAACaatcataatttgttttctgactgtgcccccccaaaacatttagctgcatgAAACCCCTGATgctgaatatatttatacattttgcagaCTATAATAACACTTTGGCATGTGGTTGGCACACACTGATATCGAGGCTTGGCATGGGTAACCAAGGGCTAATGGCATTAATTCAATCAATCATCCACcgaatttaaaatacatatgtgaAACAGATGAAGGGActgcattatattttgtaatgcctTAAAGAGAGTGTACTGTACAAGATTCAAAACTGTCTCTTACACAGTCTGGAAGTAGAGGAAGCTGCTTTATGCTGACTGCACAAGGGCCGCAGTGCCAGTGTCTGTGCCAGGGAATGTCAGTGACGGTGTGTCACGCTCCCCAGCAAGTGCCTTTGTTACTTCCAGCTattcaacaacagcaaaaatatTATGTTGCCAGGATATGGGGGGGGAgggctttaaaaaatacataatagcCGAGGGAAAAGAATTTCAGCACTAGATGTAGATAGTCAAAGactgaaagaaagacagattGGACAGATGGTCCGAGAAAGTCCACTTGTTTTCCAAAATTAACGCTAATccaaaatacatgtaaacataaaaagatactatttatactatatataaatgtatactgctatatatgtatatgtgatatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63793 lncRNA downstream 19598 9389784 ~ 9390161 (-) True G51007
TU63792 lncRNA downstream 20189 9389211 ~ 9389570 (-) True G51006
TU63791 lncRNA downstream 20711 9388824 ~ 9389048 (-) True G51005
TU63790 lncRNA downstream 21151 9388258 ~ 9388608 (-) True G51004
TU63788 lncRNA downstream 28005 9380751 ~ 9381754 (-) True G51002
TU63838 lncRNA upstream 110380 9521354 ~ 9525687 (-) True G51044
TU63852 lncRNA upstream 166294 9577268 ~ 9578383 (-) True G51057
TU63883 lncRNA upstream 327672 9738646 ~ 9739256 (-) True G51081
TU63909 lncRNA upstream 498637 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 516271 9927245 ~ 9931102 (-) True G51120
AMCG00008709 mRNA downstream 83040 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008703 mRNA downstream 122072 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008704 mRNA downstream 154105 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008702 mRNA downstream 180300 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008705 mRNA downstream 204367 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008713 mRNA upstream 2724 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008717 mRNA upstream 120859 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008719 mRNA upstream 151926 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008718 mRNA upstream 168415 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008723 mRNA upstream 329310 9740284 ~ 9757947 (-) True AMCG00008723
TU63794 other downstream 16532 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 749742 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1038429 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1115405 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 1115405 8291799 ~ 8294354 (-) False G50712
TU64089 other upstream 1162509 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1266289 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1266289 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1269304 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 1269304 10680278 ~ 10682873 (-) True G51241

Expression Profile