RNA id: TU63838


Basic Information

Item Value
RNA id TU63838
length 4314
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G51044
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9521354 ~ 9525687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttgtACAAACtggaattttatttaaattgcaaaccGTAAAATACAAccataaacaaaattacaatattaaaataaaaaatacaaaatttccCCCAATATGGGGAAGAGAAAAATCCACCACAATCCAGAGTATTTTCATTGAAGGCGAGCTTCAAATATTCTCCTTCGCTGACATATTTACAACTAGAAAAtgcttgggaaaaaaaaagaaaaacacacacacacacacacacacacacacacacatccacacacaccaacaacaacaaaaagcaggaCTGACCCGGTGCAATTGGTTCATAcatcaagttttcaaaatgagcAGCAGAGCAAATGTAATAATGGAAATCAGCTTTCTTTCAATGTCCACTCCCAAACAGATGTCTTTCAGGGTCTGTGGTCAACAAAATCAATTAGCAGGAATTCTCCTGCTTTCATTCAGTACAACGATATACAACTGAAAGAACCAAGAAAGACATACTTGGAGAATGAATCCAGttagcattaaaaacaatcacatgCTTCTGCAAACACAATTCCTTCtccaaaatgtttctttacCATGTTTTGCAGTGGCTTAATTTGGAGTCtctaaaaaaaatttaaataaaaaattaaaatatataggttttacattttcctacaaacagaaaatatccTCCTAGGGTTAAATCAGAATATACATAACTAGGGTGAATCGCTCATGTTCCTGGTAAGCATGATTCAATTAGGATTTTTTCCCTCaaatacatctaaattaaaacttcaAAAAGACCCAGAGAGAACAGAAATAGACACTACCGAACTGGCAGCCCCTGTGTGTAATACTAAAGACTTAAATTTGAAAACTTTAATGAAAACAACTTACCCACTATGGCCGTTTGCTGTGCTGcatgatttgaaatattttatccaattgaaaaaatatatatacacgtatatGGTTTTATAATAgaattttgttatttgtgtctCTTTACTCACATTAGTGTTGTTATGCTTTTATTGCCAGTTACATTAACAGCTGCTTAAGGCAAGCACAAACAGGaatgatatatttttacaaattaaacgTTTAAATGGATCCCAGTTGTCACAATCATTTTTCTTGTTCAGACATCATGCGATTCAAGCCAACGTCTACCATTCCCTGGTGTATCCCTTATAGGACAATTTATAACTAATGCACAGACCTATCTAAGCTCTTAAACTGCAGGGGTGTTTGTAGAGATTTTTTACAGATAAACtggaatgtatgtgtgtatatataggtttatctatacagacacatgcactcattatgcatattgcactaatTACATTCATAATTCAGATTGGACCATCGGTAAAAGGAACAAATAAGCgtttcttcatttataaaaggaCTTGATAAGcagtgagaaaaaaaattagCACATTTTGGGTCAGCCCTACTGATCTACACCTAAGGAAGAATGAAACGCGagatataaaacatattgcacTTACAACACATGGTAGGAGTGTTCCTAATAACCTGGCTGGTCCCTTAATATCTCCGCCTTGTGGCTCCAAGGCATCGATTTCTCTCCCAGCATCCCAGTTCTGCACATACAGTGTAAACCTGCCTTCTCAAAGCCCACCCTGCAGgctcccccacccacccccacagaaaacaccaccacacagGCTGGACACAAACCAATTGTTAAGACTGGGCTTGATGTTGTGCAGTTACTACACACACCTTCCTCGTTAGGATCTCTTCCATGGTGACGGAAAAGCTAAAGAGACCAGGGCCAAGACTAGAGACAAATTATAGCCCAGCACCGGATGGCCATTTTCATTGGTTAATGAGTAGAAGCAGCAAGCTTCTGGCAAAAGTAAAAGGGCAGGTTTGTAATGTAGCAATTAAAGGGGGGATCAAAGTTCTCGTCATTCAATCCCAGCCAAGGACTGAAAATGATTGCATCAGCTTACCGTCATACTGTGATAACCGATTACAGAGTTGATAAGTGGTTAAAGAAACGGATCAAGTCAGtccagtaatgaaagattaaagGAGTACGTTTCTTGGTCATACCTACAAAACGGTGTATAAAATGCTGCGTTTTTGGGGTGTAGAGATCAGACAAGATGCTGTCCATCCTGTGCAGCTCAGCGCAAACTGTGGTCAAAAGGATGACCCCCCCGGTATTAGGAACCCTCCAGattaagttaatattatgtaaaaacaaaaacaaaaaaacaaaaaacagaccaaaGCCCAAAACATATTTCTTCACTTCCTGGATGAAGTTGCACCTGTGAGTGGCTAGTTCAGATTGTCTTTGGTTTCTTGACAGTCAGTGCGGGTGGACCCTTGAGGAAAATGCAGTTGTTCTGCCGACCTTTGACCTTAAACCCCCACCTTTGACCCCTTTGGAAGGCCCCCCTCAATCTGCACACTGCCCTGGTTAGTTTCCTCTCCAGTTTCAGAGGAACGTCTGGTCTCTGTTCAGTATTCAGAGTTTGTCCCACTCTCCCCCCTGCTCTCAGTAATTAAAGTAAGCAAGAAGCTGaacttattttcaatttgtgcCATCTTCTTGGAACAGTTTAGCGAGACTGATTTTCAAGCTCTTAGCACTCCCAACATTTCCCACATGTCTGCTGTTTTGAACATCtcactttgtttcctttctatTCCACTGATTTTCAGCTCTAGGCCTGAAGGACACTTGGGTcatctgctttttgttccaGAAGACTAGGGTTAAGAATCATGGTTGTATTCTGATATTTCACTCTTTGGGGGGAGGGTAGCTATAATTTACTAGCACACAAGTCTTAAGACTGACCTTTCACCAGTCCAAGGAGTGAAATAACTGTTGCTTTACTACaggagaaaagcaaacaaaactttGCCATGACCTCAGACGACACAGGAATCTTACGGTCGCCCTATTAATGCAATGACAACATTTGCCAAGTCCAGATTCGATGTCCTTGTGCATGTGGAGAGGCTGCTGTACTACCGGTCTCTCTCCACCTTCAAAAGAGCGGCAATATATTGGAGCAATACGAATCTGAATGACACACTAGATGGATGAAAAACTCCCGTGGGGTAACAGAACTGTCGGGGGGTGCTAGACAGCTTCCACAGAGGACCACGGACCCAGTCTGCTTGGGTTAATGTTGATAGAGATCAGAGGATCCTAGTGGCTTGAGTGCAAACAGAACCCGCAACAGTGTCATTCTTAAGTGGCACCAATATGAGCCCgactatgaaaaaataattaaaagaacctgaagaaaataaaatgtgctccTGGGTTCCATCTCCAGCTGGTTAGTATTCATATACGCGTGTTTTGGCTGCAGTCTTAAATCATACAAGCCCTGTGTCTGGAAGTCCCCACTCCTTAGAGACTTAGCCAGACTTCTGCAAGacaaaattagaaaaagcaagAAATGCACTTAGCTGAACAATCCAAGTGTTGGACTAATgtaagggggaaaaataaataaaataaaatcagtccCAGCGTAGGAGTAGGAGATAAACCTGGTGTTTCAGTCCATAGACCAGAGGAATATTGGCAATGCAAAATCACAGCCCTGGACGTTATGTTTTCCCATCTTCTTCCTACTAATTGATAATTCTCTCCCCGATGTCCGTTTGTAGACCTTTTGATTCTTTGGCAAAAGGAGCAAAATCCACCCTCCTTTGCTGGAATATGCTCTGCGACCGATTCTAGCaccaagagaaataaaaataaaacaaccccctcccccccaaatgacaattaaaatcaaaccaatTCCCTGACACAGGAATGCATGTATCTCAAGTGTAGGCTGAGGATAACCGTCTTCCACAAACAAAAGTGAGTCCAGAGATCGCTAAGCCAATCGGTGGCGTTTTGGAAAATAGTTCGTAAACGGTGCCTGTTTCGATCTGAACGTCACATCCACCGTGAGGCTGTTGTGAGGTTTTGTACTATCCTGCATTTCCTCTTGAAGAAGGCTCCCAGTAGCCCACCCCAACCCCCtcctataaaataaatttaaattataaacattcatttggttttgattcattttttttttagtgcagCAAAGTGGAGTTCCAGTGGTCTTCCTCCTACATCTAAACTGCAGTCTTCCTTTACAGTCTTTGGATTCCATGGCAATCTTGTGGGTAACtcgttttggttttgttattttgcgtTATTTGGGGCCCGCTTCGGTTTTAGGCCTCTGATGCAGCCTGGGGCTTGAGTTGCGCCTTCTCCATCGCAGTGCCGTAGGGTAGGGATCGTTTGAAGAAGCCAAGCTGGAGGAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63804 lncRNA downstream 110380 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 131193 9389784 ~ 9390161 (-) True G51007
TU63792 lncRNA downstream 131784 9389211 ~ 9389570 (-) True G51006
TU63791 lncRNA downstream 132306 9388824 ~ 9389048 (-) True G51005
TU63790 lncRNA downstream 132746 9388258 ~ 9388608 (-) True G51004
TU63852 lncRNA upstream 51581 9577268 ~ 9578383 (-) True G51057
TU63883 lncRNA upstream 212959 9738646 ~ 9739256 (-) True G51081
TU63909 lncRNA upstream 383924 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 401558 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 812638 10338325 ~ 10343165 (-) False AMCG00008741
AMCG00008713 mRNA downstream 103463 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008709 mRNA downstream 194635 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008703 mRNA downstream 233667 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008704 mRNA downstream 265700 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008702 mRNA downstream 291895 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008717 mRNA upstream 6146 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008719 mRNA upstream 37213 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008718 mRNA upstream 53702 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008723 mRNA upstream 214597 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008724 mRNA upstream 240036 9765723 ~ 9794180 (-) True AMCG00008724
TU63794 other downstream 128127 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 861337 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1150024 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1227000 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 1047796 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1151576 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1151576 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1154591 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 1154591 10680278 ~ 10682873 (-) True G51241

Expression Profile