RNA id: TU63852


Basic Information

Item Value
RNA id TU63852
length 1116
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G51057
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9577268 ~ 9578383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAGGCTACGTAATGTTCAGATACTGTGAAGATCAGTTGGTTGGATTTCACACAAAGTGTAACCAAATTCAGGGGTCTATAGTGAGTAAAtgttatctttttctttttaattttaattcaatgtttcaTTTCCGAGCATCCACAATAGAACTTCTCAAAGTCTCCCTCCACTCTCACTATTGTTCTgaaagtaacaaaaacaaaaacaaaaactgggtTATATATCGATTGATTTAAAAGTCACCCTGCGAGTGTCAGATATAAAGTGCACCAGTTAAtccgccccctcccccctgaATTTCCACTTTGCAAGATGTGATGTGGAAGGGAAAGTGTGATCACACCTGGCTACAGCAGGACATTTGGACACGCAAGACTGAGCTCCTGTGAGACACTGTGAAAGCAAAAACAGCCACAGGAACAATGCCAACCAATGGCTAAGATAACTGGCATAGTACGTCCGTGGCACTGTTGTGTGTCAAGTGTTATTGTTCTACTGTGTGCTACATTAAGGGGGAGCTGTGAGGTAATGCTAAAAAGCGATTATAGATGCAGTTTATGTAACTAGACAATGTTCCTGCGAGGGGCAATTTAAGacttatgtacttatttaaGCTATgagtacattttgtttgtttcaagaCCTgattttgctttacattttacttGTAATTCAGAGATATCATGCCTAATAAggatgtaataaaaacaaaaacaaaaaaacattcccatAATAAGCCGTCAGTCAGCAGCACCCAAGACATGCTATTGGGTTGCAAAGCTTTCGTTGCACTTCTGAAAGTCACAGAGGCGGCAGTGGAGAAAGAAGAAGAGCACCATCTAAGAGTTTGAACCCAAGTCTGATCCTCTGATTGAAGGTTTGAAAAAAATTGACACTAATCAGCAAAATGTCCTCTGATTAGAATATTatcataaaaactaaaatactaatACCATGTCAGCACAGAAGCATGTCACAGACTGCCTTTGGAAGGGCTTTCGTAAGGTTTGAGGTTTGTGCAGTGTGACTCCTGGGCAAAATCGTCCTATTAAGAGACtcaataaatgcatttacatcTTAAAAAGGGGGTTTTGTATTCAGAACACTGCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63838 lncRNA downstream 51581 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 166294 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 187107 9389784 ~ 9390161 (-) True G51007
TU63792 lncRNA downstream 187698 9389211 ~ 9389570 (-) True G51006
TU63791 lncRNA downstream 188220 9388824 ~ 9389048 (-) True G51005
TU63883 lncRNA upstream 160263 9738646 ~ 9739256 (-) True G51081
TU63909 lncRNA upstream 331228 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 348862 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 759942 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 1090328 10668711 ~ 10673855 (-) True G51243
AMCG00008719 mRNA downstream 12097 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 22334 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008713 mRNA downstream 159377 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008709 mRNA downstream 250549 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008703 mRNA downstream 289581 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008718 mRNA upstream 1006 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008723 mRNA upstream 161901 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008724 mRNA upstream 187340 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008728 mRNA upstream 337802 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008729 mRNA upstream 338818 9917201 ~ 9920176 (-) True AMCG00008729
TU63794 other downstream 184041 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 917251 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1205938 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1282914 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 995100 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1098880 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1098880 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1101895 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 1101895 10680278 ~ 10682873 (-) True G51241

Expression Profile