RNA id: TU63883


Basic Information

Item Value
RNA id TU63883
length 611
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G51081
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9738646 ~ 9739256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcaggggatcaaatacttttttccctcactgtatataaggACCAGAGATAAACCCTTCCTGATTCTTCTCCAGTGAGTATCTTATTGATAACTTGGGTCAAACTCATAAACGGAATTTCTGTCACATTATTTGAAAACGCAGTGGATATGCAGCTTGTAATAATTATAACTGAAGGATGTAAGAGATACAGGGGATGGCTTCATTATTCATACTATGGGACAGGAAAATGTCCCATTGGCTTTTGAATTGGCATGTTGTAGAATGTCAACTTAAGAGCATTTTGAATATCTATTAAACCTTGTTCATTACATTCACTGTGAACAAGCATCACAGGGTAACAACCGCATCAATCATCAGCAGTGTTGGAGTCAAAACCACCCTATTGGAGTACGACAGACCAGGACTGTCCGAATCTGAGTCAAGACTAAGACCAGAACTGTCAGAGTTCGAGTCAAAACAGAATCCAAAGATGTCAAAATCAAAAGAGTTGAGACCAAGACCATCTAAAatattactgtacagtgtgtgcatagtgttattaataaaacagatattattattaaggctattatttgtattaatcataGTAATAATCGTAATGGAATGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63852 lncRNA downstream 160263 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 212959 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 327672 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 348485 9389784 ~ 9390161 (-) True G51007
TU63792 lncRNA downstream 349076 9389211 ~ 9389570 (-) True G51006
TU63909 lncRNA upstream 170355 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 187989 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 599069 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 929455 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 936500 10675756 ~ 10712485 (-) False G51241
AMCG00008718 mRNA downstream 151477 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008719 mRNA downstream 173475 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 183712 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008713 mRNA downstream 320755 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008709 mRNA downstream 411927 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008723 mRNA upstream 1028 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008724 mRNA upstream 26467 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008728 mRNA upstream 176929 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008729 mRNA upstream 177945 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008733 mRNA upstream 194802 9934058 ~ 9948099 (-) True AMCG00008733
TU63794 other downstream 345419 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1078629 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1367316 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1444292 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 834227 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 938007 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 938007 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 941022 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 941022 10680278 ~ 10682873 (-) True G51241

Expression Profile