RNA id: TU63909


Basic Information

Item Value
RNA id TU63909
length 849
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G51103
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9909611 ~ 9910800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagggaggggggggcgcAGGGGGTTACTGAGGTGGTGGTTTATAGTGTGAGGGGGCTATACCTTCTCATAACACACCTTAGACCCCAAAGATCTTATAggaagacaataaataaataacaccaagttttttttttcccgttttcttttttctcccctctttaTCCTCGTTCCGTTTCCTTCGTTATTAGGTAGTCTGCCCTGTGGCCGCGGTCTTGGGGTATCCAAAATGCGCACGTGTGGATGAGCAGTCAAGGAGTGATGGGAACGCTTGAGACTGAGTTGGCGCCATTCAGTGCAGAGATCCTAGGAGCGTCTGGaaagtacttttaaaaagtccgtttatatatatatataaaaaaaaaaaaaagattggtgtttgatttttttttcatttttctctttgagtgtgtgttttgtttctaatttcttaattgagttcttttgtttttttacaagaaGCAGACTGGACCAATATCGACTCCGAATTCTTGATCTGCTCCTCCTATGTCCATGGGGGCAATGTCCACAATGGGCAGACGAGATGTCTTCTGTGATTTGTACTCGATTACTGTCTTGCCCCATCGGCCGGTGTGCTTCGTGCAGCTGTCCTCCATCACACTGTATGTAAAGCGGCTGTTGCCCTCGGCCCTGATCTCCACGTCGTTGGAACCCTGCAGCAGCACGGCCTTCTTCAGGTTGCCGCTGCTCTGGTCCAGGTAGGCGATGCTGTTCTTGCAGTGGTAGGTGAGGTTCTGGGAGGCCTCGGTGGACAGCAGCCTCAGGAAGGTCATCTGGATGCTAGCGGTGTTGGGTGCCAGGCTATCATCACCATAGCTGAACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63883 lncRNA downstream 170355 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 331228 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 383924 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 498637 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 519450 9389784 ~ 9390161 (-) True G51007
TU63928 lncRNA upstream 16445 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 427525 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 757911 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 764956 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 764956 10675756 ~ 10712485 (-) False G51241
AMCG00008724 mRNA downstream 115431 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008723 mRNA downstream 151664 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008718 mRNA downstream 322442 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008719 mRNA downstream 344440 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 354677 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008728 mRNA upstream 5385 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008729 mRNA upstream 6401 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008733 mRNA upstream 23258 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008735 mRNA upstream 40284 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008732 mRNA upstream 59763 9970563 ~ 9975121 (-) True AMCG00008732
TU63794 other downstream 516384 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1249594 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1538281 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1615257 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 662683 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 766463 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 766463 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 769478 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 769478 10680278 ~ 10682873 (-) True G51241

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU50948 True 231 lncRNA 0.34 1 CI01000006 7173217 ~ 7173447 (+)
mexican tetra (Astyanax mexicanus) TU50948 False 1623 lncRNA 0.42 4 NC_035900.1 19275151 ~ 19352477 (-)