RNA id: TU63928


Basic Information

Item Value
RNA id TU63928
length 650
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G51120
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9927245 ~ 9931102 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTATAACAAtaccaagtgatccaagaaaaaatgatttaatgacTTCAGATTACAGTATATGATCCAGTGCCAGGTATTGGTATCTCTTCCACACTCTCATACAGTACCAAGAGTAAGGCAAAAGCATATATCAACAGGATGCATCTGAACCCCTTTTAATAAACAGCCTTGTACTCCACAATGAGCATCCACCCAGGTCAAAAGAGGGGGCTTGATTACAATCATTTAGAAAGACTCTGCTTTATCATATGTgcactaaaacaaatgtatacatgttgACTCCCTTTTTACAAACCCCAAACTTGCCAACGTTTCCAAACAAACAATTCTCATTATATGGGGGTATTTAGCACGGAAGGGGTGGGGCTAAGCGCCTGTCAGTCTTTCAGGGTCTCTTCTGATTGGGTTTCTGCAGCCAGTTTGAGCTCTTTCTGCCGCTGCATGTAGCGGTACCCGCGATGGGCGCACAGGTATCCGGCGTAAACCGTGAGCACCATCATGGAGCCGGAGAAGACCCGGTATCCCACGTCTGCCAGGCGCTTTCCCAGGACCATGGCGACCAGACTGCGACTGCAGGGCAAACGGACACAAAGGTGGAGGAGACACAGCTGGAGGAAGGTTGTACACAGACTGCTGCCCTCATTCCCG

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0098656 anion transmembrane transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63909 lncRNA downstream 16445 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 187989 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 348862 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 401558 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 516271 9409759 ~ 9410974 (-) True G51015
TU64025 lncRNA upstream 407223 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 737609 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 744654 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 744654 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 744654 10675756 ~ 10712485 (-) False G51241
AMCG00008729 mRNA downstream 7069 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008728 mRNA downstream 10497 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008724 mRNA downstream 133065 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008723 mRNA downstream 169298 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008718 mRNA downstream 340076 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008733 mRNA upstream 2956 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008735 mRNA upstream 19982 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008732 mRNA upstream 39461 9970563 ~ 9975121 (-) True AMCG00008732
AMCG00008730 mRNA upstream 48385 9979487 ~ 9998091 (-) True AMCG00008730
AMCG00008731 mRNA upstream 84622 10015724 ~ 10034597 (-) True AMCG00008731
TU63794 other downstream 534018 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1267228 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1555915 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1632891 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 642381 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 746161 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 746161 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 749176 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 749176 10680278 ~ 10682873 (-) True G51241

Expression Profile