RNA id: TU63938



Basic Information


Item Value
RNA id TU63938
length 609
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G51129
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9973296 ~ 9975207 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAAATGCCTTTGTGTGTGACTTAAAAAACAGTAAGATATAACGTTCTACATGCACAGGATATTACAAGGGGTATCAACATCAACATAAACATTCAGCTACACATTCAAATGAAGGACACACTCCTGCCAGTCGAAGCTCACCAATCCCTGTGGTTTGGGTAACTGTGTTACATAACCGGCCCGTGTCTACACCTCTCCTGTCCCACCTTGATGAGGGAGATCCCAATAGCATCCTTCTTGATCTTGCCTTTCAGAGTGTCGCACAGTTTGCTGATGAACTGGTGAGGAATCACGAACACCAGGATGTCCGCATCTGCAGCCGAGTCCAGCACATCCGGAATGGCCACACATTTGTGGGCAGCTTGTGTCCGGGCAGGTATTTCACATTCTCGTGCTCTGTGTTGATGATCTCGGTCAGCTTGCGGCCGCTGACCATCTCCTCGAAGACCCACATGTTGACTGCGGTGTCGAACTTCTCCAGCGCTGCCGTGTTCACGCCCACTATCTTGGCGATGGCCGAGCCCCTGAGCGGAGACGGCCAGTCAGTTACAGAGCCCCAATCCTCACTAACCCTCTCCCAGCATCGCCAAGTCCAATGAGATACAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63911 lncRNA upstream 35544 9915494 ~ 9937752 (+) False AMCG00008725
TU63900 lncRNA upstream 179077 9792138 ~ 9794219 (+) True G51094
TU63867 lncRNA upstream 258129 9640756 ~ 9715167 (+) True G51065
TU63786 lncRNA upstream 574927 9392027 ~ 9398369 (+) True G51000
TU63777 lncRNA upstream 593717 9369132 ~ 9379579 (+) True AMCG00008707
TU63944 lncRNA downstream 4191 9979398 ~ 10071199 (+) True G51134
TU63971 lncRNA downstream 245026 10220233 ~ 10222915 (+) True G51157
TU63989 lncRNA downstream 299974 10275181 ~ 10281982 (+) True G51168
TU64049 lncRNA downstream 583432 10558639 ~ 10563099 (+) True G51209
TU64050 lncRNA downstream 589167 10564374 ~ 10564940 (+) True G51210
AMCG00008727 mRNA upstream 41781 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008725 mRNA upstream 47400 9915494 ~ 9925896 (+) True AMCG00008725
AMCG00008726 mRNA upstream 62523 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008721 mRNA upstream 237558 9704582 ~ 9735738 (+) True AMCG00008721
AMCG00008722 mRNA upstream 278224 9692091 ~ 9695072 (+) True AMCG00008722
AMCG00008736 mRNA downstream 242131 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008738 mRNA downstream 283239 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008737 mRNA downstream 301743 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008742 mRNA downstream 336375 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008745 mRNA downstream 636176 10611383 ~ 10618165 (+) True AMCG00008745
TU63913 other upstream 42215 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 42215 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 657145 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other upstream 657145 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other upstream 657145 9310086 ~ 9316151 (+) True AMCG00008710
TU64057 other downstream 730271 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1009683 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1485156 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2740287 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2867508 12842715 ~ 12846233 (+) True G51756

Expression Profile