RNA id: TU63971


Basic Information

Item Value
RNA id TU63971
length 2525
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G51157
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10220233 ~ 10222915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGATCTGTGACCTGCTCTGTACAATATGCTGATTGGCACTGTGGCCCAACACCAGTGTGTTCTGGGAAGGGATGTACATTGAAgaaactttttaaatacatttatttaaaaaaaatagacatttgcACACTATATTTGAGGCTTTAAAAATGCCCAGTCTAATTAACACTTCTACACAGTCCGAACCTAGAAGCTTTTCATGTTTGATGCTTGGGTGGCAGTTCTCTTAATGCAGATTAGCAGTAACTGTAcagtaataaaaacagtataaaaaacaTATCCTGCCTAACCTTTGAGGAACATAgaaggcttttaaaaaatatagtgGCAGGATTTTTTCCTCAAGAAACTGGGCAGCCAATATCTGTATACAATTcattatttgcatatatttatatattgtgacacaaagaaaacaacatatgTACATCAGAAACAGTGGCAACTTCTACAGCACACAACAGGTGTACAGCTGAGAGTTTCTGACAAAGAAGGGAAATTGGACgcaaatcataaataaatcaaacactcTCTGCATTTTCCATAGCATTAcatcaggggttttcaaaccggtcctggagtacaccctgcattACATTAACGTTAAGTCCTGATGCTCGTTGAATACTGCGATTCCTCTTCATCAGCCAAGGAGCTCCTGGATTATTAATACACGAAACTCCCAGGAGGATCAGAAGTGACAATACCAGAAGTCAAAAATTCACAATGTATTTCGCTGGGTGTAAATCCACCCTTGGGCTTCATCAATACTGCCTTCCTTTTGATACATGACCACAGAAACATCTGGGCCAGCGGGGGCCAGCCCtgttcctggagggccacaatCCAGCAGCTTTTCCAGCTATCTCGGAATCCTTTATCAGGGGCTACCTCCAACACATTTTGACTGATTAAAGCCAACAGTTGGCTCAATTAAGCACTTAAAGATTTGGATCAATCAAAACCCAAAGAAGGCACGCTGTGGCTCTTTGAGACCAGGGTTGCCCAGCCCTGATTGAGGCCAGTTCCCCTCTCAGTGCAGTTTCTACTGCCGTCTTCCACACGTCTGCGCTCTCCCATCATACAAACATCCAGCTTCTCTCGGCGCTCTACACGACCCACAAACACAGGCTGCTGTTGTGCGTGGGTTTGTGCTGCGTATATGTCTTCATGTCAAGGCTGCCGATTCAATTATAGCTGGGATCTGTATAATTTAGTATAATTCTGTATAATAAGACTTCAATTTTAGGCACTTAAATGGGATTTAAATTCCCCTGGGTGTGACGTACAATAGAACAAAGTTTCAGCAACCACATTAAAGTTATATAGGTTGCATAATACATAAAAGAAATCCTTGGCCATACAGTGTGCTAGACAtaacattacaatttcaaagcTCTCTATGTTctacatttctttatattttaagctGGTGTCATATGGGAATAAGAGGGACGTACAGATTCAAGCTTTTTCTGTGGAAACTGTGGagcataaaatgtgttttgtattggcATATCCCATCACACTGTAGAACGCCGGCTGCACATTTTCACAACTGTGCCTTTCTGTCGTCCTCCAGGGACCTGCTGGCGTCTCCTGTTAGGAGAGATCAGTCTTGACAAACCGGAGAGTTGGGTTTCGAATACCTGTAGGAAATACTGCAAGAGACACAGAGCAAGTGAGCACAGGGCTGCTACAAATCATCGATACGTCAGTGCTGATGTTTGTTCATTCAATGGACTTTGTTGACAAGACCCGTTGAGCTGCCTGTGCTGGACTCAAAGTGGTCCAGTGTAAAAgtgctataaatatatatacatgtataaaggCTTGTTCTGAACCAGCGCTGAAGACTGTGGATCCATCCTTCAGATGTTAAATCAGGCTCTTTGTAAGACTCTCTATTCCCACCTCTCTCTGGTCACTCAGGAAGATGAGAGCAGCTATTATTGAGTGTGTCTTATAAGACTGGCCTTTGAATCTGAAGCGGCACTCAGTTTGCATAATCGTGGCCGACTCATGGCCAAATCAAAAATAGCTATCTGTGGGAACTGACATCAGTGCCAGTTTTTGGTGCTAGTGTTCATTCACAGTGGGGTCCACCTTGTTGTTAGAGTCCCACTTTGGCCGGTGAAATAAATTACCCAGAACACCAAACAGTCATCCATGGTGCAGGAAAAAGtgaggggaaaacaaacatacaaaaataagccCACTGGTCATTTTTAAGTGTTCAGTGTGAGGCTCGGACAGGCAGTCTTCAGGATGCAGGACTTGTTTCACACCCACTTCGCACATCAAGGCTAAACTGGTACAGCAAGGAGGTGAACCTGGGCTGAGGCCTGCGGCTGAAGGCTCCCACGAGGCCTGGTGGGGCGGCAggcagcaggcaggcaggccggATTTCCTAACGCTCCAGGGCACGGGACAGCTGGGTCAGTCTGCGCTGGTTGTCGATCACCCTGAGGGTCTGGACGTACAGGCGGACACTGGTGGGGCTGCGGAGACTGACCGACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63944 lncRNA upstream 149034 9979398 ~ 10071199 (+) True G51134
TU63938 lncRNA upstream 245026 9973296 ~ 9975207 (+) True G51129
TU63911 lncRNA upstream 282481 9915494 ~ 9937752 (+) False AMCG00008725
TU63900 lncRNA upstream 426014 9792138 ~ 9794219 (+) True G51094
TU63867 lncRNA upstream 505066 9640756 ~ 9715167 (+) True G51065
TU63989 lncRNA downstream 52266 10275181 ~ 10281982 (+) True G51168
TU64049 lncRNA downstream 335724 10558639 ~ 10563099 (+) True G51209
TU64050 lncRNA downstream 341459 10564374 ~ 10564940 (+) True G51210
TU64051 lncRNA downstream 343822 10566737 ~ 10567811 (+) True G51211
TU64052 lncRNA downstream 346795 10569710 ~ 10569936 (+) True G51212
AMCG00008736 mRNA upstream 867 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 288718 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008725 mRNA upstream 294337 9915494 ~ 9925896 (+) True AMCG00008725
AMCG00008726 mRNA upstream 309460 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008721 mRNA upstream 484495 9704582 ~ 9735738 (+) True AMCG00008721
AMCG00008738 mRNA downstream 35531 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008737 mRNA downstream 54035 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008742 mRNA downstream 88667 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008745 mRNA downstream 388468 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008746 mRNA downstream 395811 10618726 ~ 10625169 (+) True AMCG00008746
TU63913 other upstream 289152 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 289152 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 904082 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 482563 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 761975 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1237448 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2492579 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2619800 12842715 ~ 12846233 (+) True G51756

Expression Profile