RNA id: TU63989


Basic Information

Item Value
RNA id TU63989
length 5769
lncRNA type read_through
GC content 0.45
exon number 3
gene id G51168
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10275181 ~ 10281982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCAGCTCGGTTGTAAACAGATGATATAATGTAACTGTGGCAGCAGTTTCACTACAGATAGTGGCAGACCAACTAGTAATTGTGCCCGGCTTAGGAGCACAGACGCATGAGCTTGTAATACACTACAGCTTGCACCGTATCGGAGGGGCCGGCGCTGCCTTTCATTTAAATGAACAGCAGCCCATTCCATTAGAACTTCTCTTCGGATCTTGATTTATTGATCGATTTGTTATTCCTCATGGGGATCAATAAGATTTATATCAGTATAGGCTATGCCACCTTCGGGGTGCTGATGGGCTTCTCGGCTTTCTTCGTCTGGAACGTCGCTTTCAGGCAGCCGTGGACCGGCGCGATGGGAGGCTTGTCAGGTACCGTGAACAGCAGCCTCTAATGTGGACAGATGTCAGGTGTGGGACTCGTTAGAAAAGCCGAGCTGATAATGAGCTCAGCCGCCTCTGCTGAAGGGGACAGACAGCGCGGTCTTGTTATGGCacttgtgtgctgtgtgtcgCCCGGGGTATTGTGGGCTGCTGTGTGAGATGAGACTTATTCTGGACGGATTAGCCATACTGGATCTGTGCTTAATAGCACGGTTCTGATCCGAATTAAGGCCCCTGTCCAGAGTCTACAGCCCGGTCTTTGAACCGGAGCAtttgaactgaaactgaaaaagcttTGGTTGGAAGTGCCGGTACCACACGTTACCTTAAATAGGTGGACAGGTGCTGACCTGTTAGAgtgaatgcatgtttttaattatagtgtatttattattttatatcatgTATTAAAGCAATGTATTATAAGCAACTACAACTTAGCAGTGGGACGTTTTGCACTTGACAGTTTTGGGGCAGTatgcaaattattatatatCTGATCGTGAATATAAATATTGGGAGCGGGTTGATTATATATCgttaattacttttctttgtagttttagttttatagcGCCACACACTATGTACGCAGTATCATTGCAAATTCAGTTTTGTGGAGATGCATATGATGAAACGTTCACCGTTGAGTGActataaagtaattaaaaaaccaaatattttctgtgcacattatgtatattataaGAAGGGCATGCATTCAGGTAATCAGTCAGTAAAACCACCCTCATGTAAGTTGGTAAAATAGAGAGAACTTTTAAATTCCCAGGCAGCTTCCCCTGGGGGTAAAATATGCAGTCCTGTCAGTTCCTATTTGGAAAgatacttgtttgttttgggagCTCCGGTTACCTACATTATAAACACCCTTGCAAAGTGTGGCTCACTGGTGCCACACTTTCCTTAACCGATTTATGTATCTGTTAATGCTGCAGCCGTGCATTTTTGGACCAACCTGAGGACCGACCAGACTGTAGTTGACCTTGACCTTTGTGCAATAGTGGACTTTGAGATGGCCTGCATGTTAGCCTCTGATAGGCCTTTTGCCAATGATTAACGGCCCTGCGCTGGTGCCTCTGCCCGTGAAGCTGTCAGGGCTGAGTGTTCATCGATAGCATGGTTTCATAtcagatgaggaggaggaagctAGTCTCTGACCTAGAAAATGCACAGAGTGGAAGGAAGCTTCTTTAAAACAGCCATTAGAAAGACCCCTATTTCTCTTGGCCTAAAGGAACAtctatgttttttaaatgcacacagtTCCAAATGTGCACGTTCCTCTTCTTCCTGGTCTAGCTGTGCAAATATCTTtttagggggtgggggggggggtgagatCCAGCTAAATCAAAACAGGCTTCCAAACATGTATAGGCTTTAAAGAAGTACTGAAGGGTGTGGCGGGTTAAAGAATGATGTCCCGCAGGAAAAAACGTTTGGGAGCAAACCGGGCCAACAGTATAGGATGGGTCGACTCCTGTCACTTCCCAAATAACTGCTGAGGTCAGTGGGAGCCACGgatttaatgcattgttttggaAAAGGCATTCTCAGATCGGCTACTCTTAAAACAGCACGTTGTTCCGTTTTCAAACCAAAGGCAGGAACAGCATGACTCTATCTAGattacagttgttgtttttttcaggacAATTAGAGCATGCAAAGCAAAGGGGTAAAACTAAATTGACCTGgcaatttatttagtttttaaatgggGGGTTTATctagcaaaaaagaaaaatcaacaaaatatgaCCTAAAAATATGAGATATTTGATCTCTACAACTTTGCCAGTTTTGAGGGCTGTGTGGGAGCAAACTGATTTTGTTCCCCAATCAGTGAATTAACAATGTAGGACAGTGTTTCAGTGCTGGTGTGTCAGGACTGGTTAGTGGAATCAACAGGATTTGAAGGTTGGAGGAGTGGAGATACTCTGCACCAGCTGATGCACATTTTGCAGGGTGGGCTGTGTGGCTCTGTATAGCCCTGCAACAGGAAAAGTGGAATTGTTTAataaacctgaaagctttgggCAGTTGCTAAGCTATAAAGTGTAGCTGAGGTAGCGATccttaaacagatgttttttcgGTCATATCGGGGGGGGGATTTGAGTGTTGTGCACATAGACGGGGTGGTCCAGTGCTTAAGCTGGTGACCAGGTGCTCAGATTCTTGATGGCGTACAATTAGAACAatcctttattttctctctcgcATTGTTCATTTGTGTGGCAGACACATGTATCCCAGGcattatttgctgttttttaatgcatcagGACGATGTTCAGGAggttatattgatatatttgttttgaattgacCTGgctttatattaaacattcttGTTTCACAACCTGGCTGTTGATTTGTTTGCCCTTTAGTCAGTGCAGTCGTTGAGAGGCAGCCTGACTGTGCCAGCCTCTCCATCTGGGCACCGTGCCAGCCCTGGACTATCACACGGGACCCTGGCACCCCCATGCCAGCGACTGTCCTTCTGAAAAGCTGTGCACAGTTCCAGCTCTGCAGAGTTGCTGTGCTCCTGATTTTAAAGTTATaacatttcccttttttgttccttttcgcTTGTTAATTATCGTTCGGTTGCAGTTGCCGGGGGTTTCTCTGTCGCTGTTGTTTGACTGAGACGGGGAAACAATTCAGTGATGCACACTTTGTTGCATCCCACTAATATGCTGTGCAAGACTGACATCACTTCCTCTGCAAGTATTATGAGGACCCCTTTAGAAACTCCtgatattttttcagattttcaaatTGTCAGTTAATAGATATGGCAGTGAATTAGCCTTTCTTTATTCTGAGAGACCTAACACTATACACCATTGTATTGCATCAGTAGGCTACCTGCCACATTGTACGccgctgaaatgtttttgtttccattgtgGACCCAAAATTGTGGAACAGACACGCTTGCGAAAAGTAATATATTCATCATTCTTAACCCCTAAAGTCTGTGTTACACTGAGAATGCAGGCGGTAAATGTGGCTGGCTGTTTCAACCGGCAAAGAAGACGTCACCTCATcggtctctctccctccttcatttttttaatgcaatgaaTCCATTTCGTCAGTTTCAAAAGGAGATGCCTGTCAGCAATTGTCAGTCTGCGGACAAGGAGTGTTTTGAGAACCTGTAATTAGGAGCGGTGTCTGGTGGGGCAGGTCCCTGTCCCATGCTGCTTCTGCATTATGTGTGTCAAGGAAAACAAAGGGGGTTCTTGTCTTAGGATATAGCATGGGAGATATGGAGGCATGCGAGAGAGAACCAGAGCTGTCGTGTCTCTTTAACAAGTTAAAAACATGGGCCCCTTGCATGAGAAGCTCAAATCATAGCTGGCCAGGCTGAAAATCGATATTACCAACAGCAGTATAAAAAAGGACCCACACTGTGACTGTTGGGTTGTAGTAGAGCTCATGTGCTATGTAGAGCTTTTGTTTGCGAAGGGCCCCGTAACTGCCAGGATGGGTTGCAATATCCTGGACCACAGTGTACAGAATGGGCATGGGTTACACTTTATGGGGAGGGTCTGGACGTCTACCAACATGATAATGCTGTCAGTTGGGAGTGTAAGGCAGTGTTTCAAGGAGTAAGGCATTGAAAACAACTTGATGGCCCTGACCTCAACTGTGTAGATTAGAACACGACCGTGATCAACTGGAACAGTGAACCtggaccaaaaacaaaaaccctgtaAATACCAACGTCTCTCGCTAAGCTGGTAACTGCAGTTTTGTGACAGAAAGGCAGAGTATTGTTCTAAACCTCTGCCTAGACcctattaaattaatttgaaatcacTGTCGGTTGCATCCTGTTTGTTAcgtaatacattttgtaatgaagTGTACTCTGCTCCACTCAAAAGACATACAAAGTCCTCAATTCAACCCGAGCCCTACTGGCATCACTCAGCAAATTTGGGTTTGAGAACCATGActaagtttaattttgtttttgtggataTAACTTCTTGTGACCGGACATAAAAAAGGCCCTTCTGCAGCTCGCGTTTCCTGTTTAGGTCACAGGCCGATCGGCAGCTGGGGATCGAAACAGGAACGGGGTCCAGTTTACGTTCCCTTTGAAAGATTGTGCCGAGTCATGCTAGGCCCAGCAGAGCCCACATGACAAGGGCTGCCCTGCTGAGTCATGTTGTGAGGACTCCTATAGTCAGCAATCCAGAAGAGAGCGGGTCACGGTTACAGTAGCCTCTCATCAATgtcagacattaaaaaaatatataattatgattgtaaaaaaaatgatatccCAAATACACTTTTGTCTTTAGCATccatattgttgtttgttttctgtggagTCAAACGCATGCAAGAGGCTCTTCCTCCCTGCGTCTCGTGAGGCACTGGAGGGATTTGAGAACACGGTGTGCTGTGGAGGCTGATGAATGACACACTAACTCTTTCAAAGGACTCTTTCCCAGCATTTCAGTGGCTCGTGCCTTGCAAGGAAAGCAGGTATTGTGTTTGAAGCCAAGAAATACTTCCCCAGAGCCGGAAGAACTGGAAAAGCCCTTCAAACTTAATTGATCTGTTGAGGCGAGAATTTCTCTCTGGCATTACATATGTCTTGCAGTACCCAGTGACTGTAACTGACTCTTAGGAGGATTAGATGCTGGCAGTCAACTTATGTTATAACTTAACCTGTGATTTTTACTGAATACAAACCcatcctttcatttttttaaacccccTCTCCGGTCTGGGCGCTTCCTGTGTGTTAGTTATTCCAGTGGAGGGCAGCACACGTTAGCTTGATGTAGCAGTTTAATATGCAGAGTCAGGCCAGAGAGGGAACCACATTTTAGGATCTGGGGAAGTTATAAAAGTCATAAATCACATGCATCTTATATGTATTTCGCTGACGGCATGATTTCCATCGTGTTTGATAAGAGTGGAAcagatgttttagttttgttttctgggtGTGCTGGCTCTCTGGGCCCTGATCACTCACATCATGTATGTGCAAGATTACTGGCGCACCTGGCTGAAGGGACTCAAGTTCTTCCTCTGCATTGGGGGGCTGTTCTTCGTGTTGGCGGTGGTGGCCTTCGTCACCTTCCTCTCCCTCGCCATCACCCAGCACCAGTCGTTGACCGATCCCAAGAGCTACTACCTGTCCTGCGTGTGGAGCTTCCTCACTCTGAAGTGGGCCTTCCTGCTGGGCCTGTACTCGCACCGGTATCGCAAGGAGTTTGCCGACATCAGCATCCTGAGTGATTTCTGAAGGAAAAGTGAGACCTggggtgaaagagagagagagtgtgagaaaGGAGACAGGAGATAGGGTTGATGCTGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63971 lncRNA upstream 52266 10220233 ~ 10222915 (+) True G51157
TU63944 lncRNA upstream 203982 9979398 ~ 10071199 (+) True G51134
TU63938 lncRNA upstream 299974 9973296 ~ 9975207 (+) True G51129
TU63911 lncRNA upstream 337429 9915494 ~ 9937752 (+) False AMCG00008725
TU63900 lncRNA upstream 480962 9792138 ~ 9794219 (+) True G51094
TU64049 lncRNA downstream 276657 10558639 ~ 10563099 (+) True G51209
TU64050 lncRNA downstream 282392 10564374 ~ 10564940 (+) True G51210
TU64051 lncRNA downstream 284755 10566737 ~ 10567811 (+) True G51211
TU64052 lncRNA downstream 287728 10569710 ~ 10569936 (+) True G51212
TU64072 lncRNA downstream 327764 10609746 ~ 10673784 (+) True G51220
AMCG00008736 mRNA upstream 55815 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 343666 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008725 mRNA upstream 349285 9915494 ~ 9925896 (+) True AMCG00008725
AMCG00008726 mRNA upstream 364408 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008721 mRNA upstream 539443 9704582 ~ 9735738 (+) True AMCG00008721
AMCG00008742 mRNA downstream 29600 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008745 mRNA downstream 329401 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008746 mRNA downstream 336744 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008749 mRNA downstream 410553 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 515789 10797771 ~ 10803672 (+) True AMCG00008753
TU63913 other upstream 344100 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 344100 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 959030 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 423496 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 702908 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1178381 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2433512 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2560733 12842715 ~ 12846233 (+) True G51756

Expression Profile