RNA id: TU64049


Basic Information

Item Value
RNA id TU64049
length 1838
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G51209
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10558639 ~ 10563099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTACTTTTaaggtatgtatttttttaattatacaagtaATTGGTAGTTGTCACTATAGTACAACAGATTTCCatcataatattgataataataatgtcctgaaaaatatataaattaatactttggtGCCCACTGTTCTGCTGGCAATTGAAGTGGAATGTCTGAGACGGGAATTCTCTTTTCCTGCCGCTCTCTGCCTGGCTGTGGCAAAGCTGACCAATCATAACAACGAGAGCACTGCCCCAGAAAGTAATGCCCCAGATAACTCCTTCACATTGATGACCAAGCATCGATTgtgtctgctttttttttggttttaaacccAGTTTCTGCCTGAAAGGGGTGTTTCCCGCATGTCCAGTTTCTGCCCTGCAAAACTAGAACACAGAAACAGGCTTGTGGGTGTCCTGGGTAATCCCAGTGCCCCCCATAATGCCACTGATTCTTCCATTGTGCTACCAGGCTTGGTAGGGTAATTGTATTTGCCGGTTCTATTTCTGCACTAGAAAAGGTTCTAGGCCCCAGAGATGACCCAACTTAACTAACCTTTAAAGGAAGGTCCGCTTTTTCACAGCACAGGCATATGTGAGTTATGTGGCAACGTGTTCAACAAATGATGGAACACGTTACGCAAGGCACGCACACGCTCCGACAAACCCAGCACGCCAACGTTTTTGCTGCAATTGGGAAAGACGTCTGTGACAGGCCTATGGAGAAGCAGGCTTTCTCTGTGCTCTTCAGGAATGTAACTCATTTATAACATTACATCTGTGCAGGGGCATAGGTTTTTTTTAGAATTGGGagacactgtcaatattggggggatGCGTCCCCTCCatccccccctaaacctacatCTATGCGTCTGTGGAGAAAAACGCCATGGGTATAAGCAGAATCACAGAACACATCCTCCACGTTAACTGGGACCTTCCTGTACTCtcccaaaaaatataaaacacacaccttAAGGGAGGGTGAGATAAACCAACATTTTGGCATTTACAGccatcaaaatacaaaaaacttcTGAAAAGTCTGAATACAACAATGCTAGAAAATTTCAGAACGGTGCATTCTATGGGGGAGTCAATTACTTGCCATACCCTGATCAGTCACTGCTCTACTTCACCTACAGGGGGAGCCGTTCCTCTGGTTAGGCACTCTGAGAGGGACACTGCAGCTCTGATACAGGCTGAGGGATCTGTGCCAAACGGGAAATAGGACACGGATTTACAAAGCTGTCGCCACCAGGTTTGTTGACTAGACCTGCGataaataacaatgataataatacaaaatattgctgCGAAGGGAGAGACGCTATACTCATTAGTCACTCTGCTTAACATCAAGAACTCTTCTTTTCAGtgcaaaaagacaaacattcaCAAGAAGGCTCGATTGCATTGgtgtcacacaaaaaaatggaaGTGCAGATTTACAAATACACAGCTATCAAAACAGAAAGAACTACAGTGAGACACAGCTAtaatttctttacaaaaaacactgcttttaagTTCCTGATGCATTTAGTCACTTTGAATCTTTATAAAGGCTTCTTCCACACCGAAATGCAGATACTAGTCACTGGCTGTTTTGTCCCTGTATGGGTCACTCTTCAATCCAGCTGGTGTACACTGGGAAAGAGGAAGGTAGTGTTCACAAGTGTGGTCCGCTGAGCTTCACTGAAGATTTACAGCCTCATAGTGTCTCTGTTATCAGAGTTTGATGTACTCACAAGCTTAGAAAAAGCACAAGTTGTCTGAAAGGGAAAAACCTTTCAAATAGGATGGatgatatacaatatatactcacctaaaggattattNN

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63989 lncRNA upstream 276657 10275181 ~ 10281982 (+) True G51168
TU63971 lncRNA upstream 335724 10220233 ~ 10222915 (+) True G51157
TU63944 lncRNA upstream 487440 9979398 ~ 10071199 (+) True G51134
TU63938 lncRNA upstream 583432 9973296 ~ 9975207 (+) True G51129
TU63911 lncRNA upstream 620887 9915494 ~ 9937752 (+) False AMCG00008725
TU64050 lncRNA downstream 1275 10564374 ~ 10564940 (+) True G51210
TU64051 lncRNA downstream 3638 10566737 ~ 10567811 (+) True G51211
TU64052 lncRNA downstream 6611 10569710 ~ 10569936 (+) True G51212
TU64072 lncRNA downstream 46647 10609746 ~ 10673784 (+) True G51220
TU64079 lncRNA downstream 112466 10675565 ~ 10712485 (+) True G51226
AMCG00008742 mRNA upstream 246542 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 273481 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 283428 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008736 mRNA upstream 339273 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 627124 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008745 mRNA downstream 48284 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008746 mRNA downstream 55627 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008749 mRNA downstream 129436 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 234672 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 265469 10828568 ~ 10846436 (+) True AMCG00008752
TU63913 other upstream 627558 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 627558 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1242488 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 142379 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 421791 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 897264 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2152395 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2279616 12842715 ~ 12846233 (+) True G51756

Expression Profile