RNA id: TU64051



Basic Information


Item Value
RNA id TU64051
length 1075
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G51211
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10566737 ~ 10567811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cCAAAAAGTTGAAGTCAGCTGCTCAAGAGCTTGGGTGGGGTGAAAAACCTGAGGGGGCAAGGCTGGCAAAGAGCCCCCGTGCCACTCACCCCAGCCCAGGATGTAGTACCAACACAGCTTCTGCTCCTCCACGAACACGGCCACAATGATGAGGGTGTGCAGGTAGATCCCTTCACACAGCATCCAGAAGTAATTGCAGCTGTTGGTGTAAAGGTTGAGGAACTGCAGCAGCTTGCAGCTGACCTGACGGTGCACACACAGCCATAGAGAATCAGGcaggaattaaaattaaataagtgttttagtATAAATAGTAATAGATCAGCTATTGGTAGGGCAGGTTTGATAAAGACTATAGTGTTGTTACTATAAACAAGGGCTGTCTGCATCTATGTCTGTCCATTTATGAACAGAACAGTGAAATTCAGGCACGACACTGCCCCCCACTATAGATACATTCTATACTTTAATAGGTCTTGTAAAGAGTGCCTCATATTGCATATGACATGTTTTGGTTGCACAAACTGAGAAATTAAGAGACACCACTTCCCACGATCTATTAACTTGTTATATATCACACATAAGGATTAgatgcagaaataaaaacatgtattgttgtTAAATTTAACAATCAACCCCCTTTCCATCTAAAAATTTATTGGCACAGGATCTGCTGCAACTGACAAAccaatctgttttgttttcatgctggttaaatgtaagaaaactaaaaaggaCATCCTGTGAAATGTGCACCACTTGTATTAAGTATCTTAAAACTTCGCAGGTAACTGAAGAATTTTGAAATCCTGATAATTCTTCACGCAGGATGATATTTATACACATGATTAGaggtataggaatgtttggaaatgctgccctgtgattggctgatgTCTGTTACGTGATTTTTATAGCCACGCTGGAGCTGCCGATCCAGAGGATCTCACCGGATTACTGAGTtcctggttgttgtttttggccatggtggagagagagatgacagTGAGGATGGAGTTGAGAATGAAGGAAAGGAAGAGGTTCTTGTGGAGAGAGATCCTCTGGCAGCTCAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64050 lncRNA upstream 1797 10564374 ~ 10564940 (+) True G51210
TU64049 lncRNA upstream 3638 10558639 ~ 10563099 (+) True G51209
TU63989 lncRNA upstream 284755 10275181 ~ 10281982 (+) True G51168
TU63971 lncRNA upstream 343822 10220233 ~ 10222915 (+) True G51157
TU63944 lncRNA upstream 495538 9979398 ~ 10071199 (+) True G51134
TU64052 lncRNA downstream 1899 10569710 ~ 10569936 (+) True G51212
TU64072 lncRNA downstream 41935 10609746 ~ 10673784 (+) True G51220
TU64079 lncRNA downstream 107754 10675565 ~ 10712485 (+) True G51226
TU64082 lncRNA downstream 107754 10675565 ~ 10712485 (+) False G51226
TU64078 lncRNA downstream 113305 10681116 ~ 10682879 (+) False G51226
AMCG00008742 mRNA upstream 254640 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 281579 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 291526 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008736 mRNA upstream 347371 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 635222 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008745 mRNA downstream 43572 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008746 mRNA downstream 50915 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008749 mRNA downstream 124724 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 229960 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 260757 10828568 ~ 10846436 (+) True AMCG00008752
TU63913 other upstream 635656 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 635656 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1250586 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 137667 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 417079 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 892552 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2147683 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2274904 12842715 ~ 12846233 (+) True G51756

Expression Profile